 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Phvul.005G040000.1 |
| Common Name | PHAVU_005G040000g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 378aa MW: 41895.3 Da PI: 6.0708 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.005G040000.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.2 | 1.2e-17 | 195 | 249 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Phvul.005G040000.1 195 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 249
788899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 128 | 4e-41 | 195 | 285 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlskeq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
Phvul.005G040000.1 195 RKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-AL 284
69*************************************************************************************9.55 PP
HD-ZIP_I/II 92 k 92
k
Phvul.005G040000.1 285 K 285
5 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 378 aa
Download sequence Send
to blast |
MELGLSLGDS SRPLLAFMEK PREASNQPGL GFTTALSIGP LIARQKDQQD EFEEEEEEEE 60
TKPRNNNNSI NTHTTEDPSK PNNNPVLHQL DLLPQLYLPW HPPSENGSLS SELGGSSRGL 120
DVNAQPPLAE DEGEEVAALS SSPNSAASSF QMDLCIYNRG GSFYKRNYEG EAYDQRASPR 180
ASDEDDNNGS GGNARKKLRL SKEQSAFLEE SFKEHNTLNP KQKLALAKQL NLRPRQVEVW 240
FQNRRARTKL KQTEVDCEYL KRCCETLTEE NRRLHKELQE LRALKTSNPF YMQLPATTLT 300
MCPSCERVAT NSTSTSSSLS APNATINANS GAMTIVKTSG SNNDSPSKAM GFPFGKPRFH 360
PFVHTSQQPH QHQSPSS*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 243 | 251 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 1e-176 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
