PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G014500.1
Common NamePHAVU_005G014500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 289aa    MW: 32018.2 Da    PI: 6.6776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G014500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.00012110132123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ C k Fs++  L  H++ H
  Phvul.005G014500.1 110 FSCNFCQKEFSSSQALGGHQNAH 132
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.4E-7107137No hitNo description
Gene3DG3DSA:3.30.160.602.5E-5108136IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.78110137IPR007087Zinc finger, C2H2
PROSITE patternPS000280112132IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MASSHNLEDY SSEASSTSQN ICHKEEGKKD EVTTTMEKGI KFEEGQVSNS KPQMVLDFAK  60
FSNDQSICGS KVELDFFNPI NITGSSSRTN HTQGRDENNK EEKSSEAKTF SCNFCQKEFS  120
SSQALGGHQN AHKQERALAK RRQGIDGGTF GNPHILYYPY PTHSLYGSYN RALGVRMDSM  180
IHKPMYPSSS LGLRFGQALS RQEMINSSSL GLRENTGIRI MGNDTILRKQ NDHGTTRNNI  240
PFLGESSTNI TTRSNLTPLN IEDNGDHSKK EEISDSTSSD EIDLSLKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.005G014500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007148790.10.0hypothetical protein PHAVU_005G014500g
TrEMBLV7BS490.0V7BS49_PHAVU; Uncharacterized protein
STRINGXP_007148790.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18223074
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.19e-21C2H2 family protein