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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.005G014400.1 | ||||||||
Common Name | PHAVU_005G014400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 290aa MW: 32407.9 Da PI: 8.0356 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 110 | 132 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C k Fs++ L H++ H Phvul.005G014400.1 110 FSCNFCQKEFSSSQALGGHQNAH 132 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.83E-7 | 107 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.5E-5 | 108 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.78 | 110 | 137 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 112 | 132 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MASSHNLEDY SSEVSSTSQD ICRKEEGKKV EVTPMKDKSI KFEEGHVSNP KTHMVLDFVK 60 FSNDQSICGS KVELDFFNPM NVGGSSSRTN HNQGRDENNK EEKSSEAKTF SCNFCQKEFS 120 SSQALGGHQN AHKQERALTK RRQGIDGGGF RNPHILYYPY PTHSLYGSYN RTLGVRMDSM 180 IHKPLYPSSS LGLRFGQAFS RQGMINSSSL GLQKNTGIRI MESDTTLRTQ SDHGTSRHNI 240 PFLAESSTNV TNKSNLTSLK IENNDDHSKK EEISYLTSSF DEIDLSLKL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.005G014400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007148789.1 | 0.0 | hypothetical protein PHAVU_005G014400g | ||||
TrEMBL | V7BUS2 | 0.0 | V7BUS2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007148789.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1822 | 30 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 2e-20 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.005G014400.1 |
Entrez Gene | 18629749 |