PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.005G011600.1

Common Name

PHAVU_005G011600g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

bZIP

Protein Properties

Length: 290aa MW: 32428.4 Da PI: 9.8474

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.005G011600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	48.7	1.7e-15	218	261	4	47
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 ++r++r++kNRe+A rsR+RK+a++ eLe kv Le+eN++L+ Phvul.005G011600.1 218 DRRQKRMIKNRESAARSRARKQAYTIELEHKVLRLEEENEKLRR 261 68****************************************94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	9.3E-15	209	262	No hit	No description
SMART	SM00338	5.6E-12	215	271	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.059	217	262	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-13	218	262	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	8.75E-11	219	264	No hit	No description
CDD	cd14707	4.11E-23	219	264	No hit	No description
PROSITE pattern	PS00036	0	222	237	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGSQGGGDNN EKHSLHHSLV RKNSLYGLTL NEVQNQLGDT GKPLSSMNID ELLKIVNTAE 60 ANQSTIVASF SLTSSLSKKT VDEVWRDIQG SKDSKQNKCQ ETQPTLGEMT LEDFLVKAGV 120 VVEPSSTPSV DPNVVTPQFP QHGPWMQYPQ AQYQLSQQGL MGIYMTSQNI TQSLHTQGNV 180 TSDGEVALSS HVMGSLTNTR RHGRKRGTSE DIVDKTFDRR QKRMIKNRES AARSRARKQA 240 YTIELEHKVL RLEEENEKLR RQKEVENILS SVPPQKPRYR IHRSASASF*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.005G011600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007148757.1	0.0	hypothetical protein PHAVU_005G011600g
Swissprot	Q9LES3	4e-77	AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2
TrEMBL	V7BW09	0.0	V7BW09_PHAVU; Uncharacterized protein
STRING	XP_007148757.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1320	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56850.1	3e-58	ABA-responsive element binding protein 3

Link Out ? help Back to Top
Phytozome	Phvul.005G011600.1
Entrez Gene	18629721

Publications ? help Back to Top
Kim H, et al. ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis. Plant Mol. Biol., 2016. 90(3): p. 303-15 [PMID:26667153] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655]