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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.005G000900.1 |
| Common Name | PHAVU_005G000900g |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 223aa MW: 25721.4 Da PI: 9.8113 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.005G000900.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 100.1 | 8.7e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
Phvul.005G000900.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
79***********************************************95 PP
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| 2 | K-box | 108.9 | 5.5e-36 | 76 | 172 | 3 | 99 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
+ss++ ++e +a+++qqe+akL+++i++Lq+++Rhl+G+ L++L++keL+qLe++Le+++++iRskK+e+ll++ie+ qk+e el++en +
Phvul.005G000900.1 76 HSSTSTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLC 166
5666669999********************************************************************************* PP
K-box 94 Lrkkle 99
Lr+k+
Phvul.005G000900.1 167 LRTKIT 172
***986 PP
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| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 34.118 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.14E-33 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 5.20E-44 | 2 | 76 | No hit | No description |
| PRINTS | PR00404 | 5.0E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 7.7E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 5.0E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.1E-26 | 84 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.159 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0048316 | Biological Process | seed development |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 223 aa
Download sequence Send
to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60
NIRSTIERYK KACSDHSSTS TTTEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDALSTLT 120
VKELKQLENR LERGITRIRS KKHEMLLAEI EYFQKREIEL ENENLCLRTK ITDVERIQQV 180
NMVSGPELNA IQALASRNFF NPNMMEGGSV YPQSDKKILH LG*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 6c9l_A | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-22 | 1 | 82 | 1 | 82 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ371899 | 0.0 | DQ371899.1 Glycine max MADS domain transporter AGL11 (AGL11) mRNA, complete cds. |
| Publications
? help Back to Top |
- Jaillon O, et al.
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
Nature, 2007. 449(7161): p. 463-7
[PMID:17721507] - Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
Plant Physiol., 2009. 149(1): p. 354-69
[PMID:18997115] - Mejía N, et al.
Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
BMC Plant Biol., 2011. 11: p. 57
[PMID:21447172] - Grimplet J,Martínez-Zapater JM,Carmona MJ
Structural and functional annotation of the MADS-box transcription factor family in grapevine.
BMC Genomics, 2016. 17: p. 80
[PMID:26818751] - Malabarba J, et al.
The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
J. Exp. Bot., 2017. 68(7): p. 1493-1506
[PMID:28369525] - Royo C, et al.
The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
Plant Physiol., 2018. 177(3): p. 1234-1253
[PMID:29853599]
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