PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G174000.3 | ||||||||
Common Name | PHAVU_004G174000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 449aa MW: 50950.6 Da PI: 7.1646 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.6 | 4.9e-36 | 47 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra...... 77 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Phvul.004G174000.3 47 LPAGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnecd 135 799************.99*********5553344444434666646**********.555666799******************8455555 PP NAM 78 ..tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Phvul.004G174000.3 136 lqGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 4433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-38 | 43 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.082 | 47 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.9E-16 | 48 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MSKMSNLSSV SSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KNMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTEGSGEPN NNSSRRDSGS 240 GSSSSKEIVT HRDEMSAPIT TFTHHPFDIH HLKPDHFSFI PFRKTFDEVG MGEASTAREV 300 VQASGSCEDV HERQRAQHVA HHHQQQQQHQ QQQHAHHQIS NSAFHISRPS HPISTIISPP 360 PLHHTSIILD DNSYHHVSRI MLQNENFQQQ QQQHHKLGGR SASGLEELIM GCTSTEIKEE 420 SSMTNPQEAE WLKYSSYWPD PDNPDHHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-13 | 45 | 189 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G174000.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152951.1 | 0.0 | hypothetical protein PHAVU_004G174000g | ||||
Refseq | XP_007152952.1 | 0.0 | hypothetical protein PHAVU_004G174000g | ||||
Refseq | XP_007152953.1 | 0.0 | hypothetical protein PHAVU_004G174000g | ||||
Swissprot | Q9M0F8 | 0.0 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | V7C7P6 | 0.0 | V7C7P6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152951.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-139 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G174000.3 |
Entrez Gene | 18633362 |
Publications ? help Back to Top | |||
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