PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G163300.1
Common NamePHAVU_004G163300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 318aa    MW: 35402.1 Da    PI: 6.3199
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G163300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.54.4e-33171082102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         F+ k+y++++d+++++li+w   +nsf+vld+ +f++++Lp +Fkh+nf+SFvRQLn+Y F+kv+ ++         weF++++F +g+k+
  Phvul.004G163300.1  17 FVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYAFRKVDPDR---------WEFANEWFLRGQKH 98 
                         9********************999*****************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k+
  Phvul.004G163300.1  99 LLRNIVRRKH 108
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.5E-3212106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5313106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-3613106IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.2E-2917106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-171740IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-175567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-176880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMEHNIIGNT NNGIAPFVIK TYNMVNDPTT DKLITWGPAN NSFIVLDPLD FSHSLLPAFF  60
KHNNFSSFVR QLNTYAFRKV DPDRWEFANE WFLRGQKHLL RNIVRRKHGG GRSNNSQSHL  120
HALKFEELDD DAMVMEIARL KEEQKALEEE LQGMNKRLET TEKRPQQMMA FLSKVVEDPQ  180
VLSRILRERE KKHLGEKKRR LLIPLPSTAA TSSSSSSGIK TEFEEDEGNI MSSSPETGLE  240
IDNNNNIICS PVTAGYWGEQ GCYGYNCGGV TTPLTVVTPA APAMGGGYLG RGSLFGEMAA  300
EGSALPPYPF SLLEGGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241410626129Heat shock factor protein 1
5d5v_B2e-241410626129Heat shock factor protein 1
5d5v_D2e-241410626129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G163300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152829.10.0hypothetical protein PHAVU_004G163300g
SwissprotQ9LV524e-83HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLV7C6350.0V7C635_PHAVU; Uncharacterized protein
STRINGXP_007152829.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-76heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]