PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G157600.1
Common NamePHAVU_004G157600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 316aa    MW: 35578.5 Da    PI: 4.5017
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G157600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.7e-16117165355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                         ykGV ++k +g++vAeIrdp         r++lg+f+t++eAa a+++ ++++e+
  Phvul.004G157600.1 117 YKGVQRRK-WGKYVAEIRDP-----IegVRVWLGTFDTEQEAAMAYERKKNEFEN 165
                         9***8887.**********9.....336**********99***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.38E-16115163IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-20116160IPR001471AP2/ERF domain
PROSITE profilePS5103217.807116176IPR001471AP2/ERF domain
SMARTSM003803.0E-15116170IPR001471AP2/ERF domain
PRINTSPR003671.3E-8117128IPR001471AP2/ERF domain
CDDcd000182.10E-20117158No hitNo description
PfamPF008474.7E-10117165IPR001471AP2/ERF domain
PRINTSPR003671.3E-8139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSGIPRATRH QGMECKRGKE KVPAKEVDVR TMMKLRIVYT DPDATDYSSE EEDDKLLSNG  60
YQFDSCSKRV VKEILLPCMQ SKSQEESSSE DANSEKIKAS SSGYFSSRRM RKSSSMYKGV  120
QRRKWGKYVA EIRDPIEGVR VWLGTFDTEQ EAAMAYERKK NEFENYLLAS SKRDFESSKE  180
MLFHASPSSV LDVSTTKAPP DVNDLNDSVK EKVNVEKVGE GGGIDTEPVN SEDNSTQHLL  240
EEFVPSLFGH EDFYLDEAEK GGMLLGNDFY NFSDNDIKGG FMWNVEHGEA TVLPPVDSAF  300
DELAWIDETL NLENS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G157600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-125AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152764.10.0hypothetical protein PHAVU_004G157600g
TrEMBLV7C5X80.0V7C5X8_PHAVU; Uncharacterized protein
STRINGXP_007152764.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1598167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-22ERF family protein