PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G157100.1 | ||||||||
Common Name | PHAVU_004G157100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 32004.9 Da PI: 9.5477 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 52.1 | 1.9e-16 | 83 | 162 | 20 | 99 |
DUF260 20 pyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 ++ p++q++++ +++k++G++ +l+ll+++p + ++++++ l+yeA+ r+ dPv G++g++++++++l++++a ++l ++ Phvul.004G157100.1 83 EICPESQSNATLFLAKFYGRQGLLNLLSDAPSHLQPAVFKYLLYEACGRMVDPVFGSTGLLSTGNWHLCEAAATAVLSGA 162 55699******************************************************************999887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.75 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-12 | 81 | 157 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MVLQITQIQM KVRVCVNSRR LGRETRKQKE KVVCVLFMRC RLFQIQCSLR VYRSGSHSHP 60 KPLAAPTVPH RNLDFMNSLV VKEICPESQS NATLFLAKFY GRQGLLNLLS DAPSHLQPAV 120 FKYLLYEACG RMVDPVFGST GLLSTGNWHL CEAAATAVLS GAPIQQALLD IRHVAKSHKS 180 CGPDSLHRVK SQTSKFKRRP AKPKVDSTVA ELAESELDGQ GSLSHDSVSG LTRTSENKIV 240 GGEADSSCSE NVVEPAATND GEIELQLTLG WGPVKKSTTV MLPRVGINLS GNT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G157100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 7e-87 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152759.1 | 0.0 | hypothetical protein PHAVU_004G157100g | ||||
TrEMBL | V7C5X4 | 0.0 | V7C5X4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152759.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18189 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-41 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G157100.1 |
Entrez Gene | 18633187 |