PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G156700.1
Common NamePHAVU_004G156700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 327aa    MW: 36624.3 Da    PI: 7.4572
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G156700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.86.2e-5581341129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+++yL++kv++++++  ++i+ vd++k+ePwdLp k++ +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke
  Phvul.004G156700.1   8 LPPGFRFHPTDEELITCYLTNKVSDSSFTS-KAIAVVDLNKSEPWDLPGKASMGEKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDKE 97 
                         79*************************999.88***************988999************************************* PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         ++  +g lvg+kktLvfy+grap+gek++Wvmheyrle
  Phvul.004G156700.1  98 IFG-NGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLE 134
                         ***.9*******************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-654154IPR003441NAC domain
PROSITE profilePS5100559.8558154IPR003441NAC domain
PfamPF023657.9E-299133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MNLMEENLPP GFRFHPTDEE LITCYLTNKV SDSSFTSKAI AVVDLNKSEP WDLPGKASMG  60
EKEWYFFSLR DRKYPTGLRT NRATESGYWK TTGKDKEIFG NGVLVGMKKT LVFYRGRAPR  120
GEKSNWVMHE YRLENKHHLR PSKNEWVVCR VFQKSLQVKK PQQTNSSPPE SPCDTVSMAN  180
EFGDFELPNL NSIANSSGGL TNNISGDTFM NADLSNSVNT NMNLAMNWAV ASEVQVPSLP  240
SLPWPSGLLS PTISVNSLLL KALQLRSYQQ REAADHLASY MAQGVCQVVG TDLSSNLRAS  300
SSKVQECMPQ QQQQQQEQPF NLDSIW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-56316012171NO APICAL MERISTEM PROTEIN
1ut4_B4e-56316012171NO APICAL MERISTEM PROTEIN
1ut7_A4e-56316012171NO APICAL MERISTEM PROTEIN
1ut7_B4e-56316012171NO APICAL MERISTEM PROTEIN
3swm_A5e-56316015174NAC domain-containing protein 19
3swm_B5e-56316015174NAC domain-containing protein 19
3swm_C5e-56316015174NAC domain-containing protein 19
3swm_D5e-56316015174NAC domain-containing protein 19
3swp_A5e-56316015174NAC domain-containing protein 19
3swp_B5e-56316015174NAC domain-containing protein 19
3swp_C5e-56316015174NAC domain-containing protein 19
3swp_D5e-56316015174NAC domain-containing protein 19
4dul_A4e-56316012171NAC domain-containing protein 19
4dul_B4e-56316012171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G156700.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-158AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152755.10.0hypothetical protein PHAVU_004G156700g
TrEMBLV7C3Q30.0V7C3Q3_PHAVU; Uncharacterized protein
STRINGXP_007152755.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49463356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.11e-105NAC domain containing protein 58