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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G124300.1 | ||||||||
Common Name | PHAVU_004G124300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 242aa MW: 27670.3 Da PI: 7.6353 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.8 | 5.2e-15 | 70 | 122 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ h+e+Er+RR+++ ++++ Lr+llP + ++K s ++ +Av+YIk++q Phvul.004G124300.1 70 KKMIHKEIERQRRQEMTTCYASLRSLLPLEF--IKGKRSISDHMNEAVNYIKHMQ 122 5788*************************65..*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.96E-14 | 67 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.075 | 69 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.72E-11 | 70 | 126 | No hit | No description |
Pfam | PF00010 | 4.0E-12 | 70 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-12 | 71 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-7 | 75 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MFPLQRGNEL VIQFSNSSNH QQHKISQDLI LDDYASLDDN VSGKKFSRSQ PENLFCEENK 60 KNHDSNEHVK KMIHKEIERQ RRQEMTTCYA SLRSLLPLEF IKGKRSISDH MNEAVNYIKH 120 MQNNIKELGA KRDELKKLSS HSNMEISHEG LHTSCNFTVH ENNGVIGIEI TSGFREEKPK 180 VSKLLQLLIQ EGHEVVSCLS SEVNGRLLHS VQCEVNHSNC VDLSELRRKV SKAFPSFKCS 240 D* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G124300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-142 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152370.1 | 1e-177 | hypothetical protein PHAVU_004G124300g | ||||
TrEMBL | V7C2K6 | 1e-175 | V7C2K6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152370.1 | 1e-176 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF792 | 33 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 2e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G124300.1 |
Entrez Gene | 18632839 |