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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G124000.1 | ||||||||
Common Name | PHAVU_004G124000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Trihelix | ||||||||
Protein Properties | Length: 997aa MW: 111500 Da PI: 7.7844 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 29.6 | 1.8e-09 | 237 | 292 | 21 | 76 |
trihelix 21 lrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 + rgk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ Phvul.004G124000.1 237 ITRGKTRADKDKEVAEFLKRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGGEREQI 292 45789999999**************************************9965544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.510.10 | 1.1E-8 | 856 | 982 | No hit | No description |
SuperFamily | SSF56112 | 3.42E-16 | 857 | 978 | IPR011009 | Protein kinase-like domain |
CDD | cd00180 | 1.91E-11 | 859 | 979 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 997 aa Download sequence Send to blast |
MGDKGDTTKK QQQQQPQSHL HHQHQQQQQQ TQQISSSPKA PREEAITEVR PIHHHQQLSS 60 VVVVTGAPPF ISSPLYVSSG ASSSPYEPQF ETLNPKRPRY SGQWKQLLPS PPSQPKQSQM 120 AMLPTTESSP SPTTHTSSNP QQPQTQTVSS SDTSSSPTHS LPLPSGGSGQ EGSNQEGEQV 180 HQQLRKGKYV SPVWKPNEML WLARAWKEQY QGGGGGGGGG SESSSRAEQQ QQAELGITRG 240 KTRADKDKEV AEFLKRHGVN RDAKTAGTKW DNMLGEFRKV YEWERGGERE QIGKSYFRLS 300 PYERKLHRLP ASFDEDVFEE LAQFMGSRMR SSHGRAGSSF VSGDEARTAL AAARALPPPP 360 RPFKDDEIPL SATTKQLAIT SGSEPFFQGS RGVLLGLDTL LDVSGSSSSK ELRRIGKIRM 420 TWEESVSLWA EEGEIHRGRV RLQSSSFLNA DELTCFDDAM VPCPMEYFED GPLKGFSVDR 480 FVSGQQVKVF GRRKSSPASD SSGFAERVQL PSKALPIRSI ATLDFRDPTE YYMECLLRAS 540 PQTLPSLYEL KRHLQEPPPE DLRFPLRRDV YEELPQGKEL FFTTTPEPLD CRTIMYDIVG 600 PIIRTSNPSL SLATSSSRDS FIPLWDECIN RVIQKFCPEE LVLIRKPTSP PPESTTQLQD 660 QWPNVTGFVN NYCLWRGEET HQLKESQPNP STTLVGKLLW TYMDLPYILG YHAVANTVTF 720 CALSRSQDGI INRTDLHEVN LTTPVEKLKA LVPCFRIGLL LALLSKRCAS ISNCKGFTYS 780 DFERVCYGNG VVTEVTPTTC MRVFMEKRKW MAVKEVYEIL DHRIPHAEVL VGFSERELAL 840 SFKPRGCRVK PGNCEELVEA LKFVTKAMVA LHDLSFMHRD LKWEKVMRRR DREEWFVCGF 900 DEAAGAPELK GHVSGARGSH APEMERGLHG VKVDVWGVGN LIRTCGLGGV PKMLRELQNR 960 CMEQNPEQRP TAADCYHHLL QLQSSLSAAA GGVVMM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G124000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152366.1 | 0.0 | hypothetical protein PHAVU_004G124000g | ||||
TrEMBL | V7C501 | 0.0 | V7C501_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152366.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11857 | 28 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-07 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G124000.1 |
Entrez Gene | 18632836 |