PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G119600.1
Common NamePHAVU_004G119600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HSF
Protein Properties Length: 341aa    MW: 37155.6 Da    PI: 5.7023
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G119600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1131.9e-35311212101
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k++++++d++++++isw+++g++f+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k+
  Phvul.004G119600.1  31 FLTKTFQLVDDQSIDDVISWNDDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKR 112
                         9*****************************************************************99.........************** PP

                         XXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkk 101
                         ll++i+r+k
  Phvul.004G119600.1 113 LLSEIQRRK 121
                         *******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-3720114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-5527120IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.8E-3528120IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3131120IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-203154IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-206981IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407094IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MAQPPPVEHN TDSTTTASAA ADSQRSIPTP FLTKTFQLVD DQSIDDVISW NDDGSTFIVW  60
NPTVFARDLL PKYFKHNNFS SFVRQLNTYG FRKVVPDRWE FSNDCFRRGE KRLLSEIQRR  120
KISLPAPTPC LTAPATVVVP TPMPLTAIPI ISPSNSGEEQ VISSNSSPSL APAELVDENE  180
RLRKENVQLT KELAEMRSLC NNIYALMSNY ANANGNTNGN GSYQTDGGAG GAQGSRESGM  240
TALKPLDLMP TKRISGEDAA EVMNPKLFGV AIGAKRAREG GGSCEDCGEE GGGKKDTLLR  300
LHHPGPADVK PEPLDCQSHR ENQETPWLSQ CHIANQRVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-243112029129Heat shock factor protein 1
5d5v_B2e-243112029129Heat shock factor protein 1
5d5v_D2e-243112029129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G119600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152318.10.0hypothetical protein PHAVU_004G119600g
SwissprotQ9SCW42e-95HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLV7C2D00.0V7C2D0_PHAVU; Uncharacterized protein
STRINGXP_007152318.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-87heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]