PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G105800.1
Common NamePHAVU_004G105800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 402aa    MW: 44078.5 Da    PI: 7.0044
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G105800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47e-29215273259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          D ++WrKYGqK++kgs++pr+YYrC+s  gC ++k+vers+++p+++++tY+g+H+h 
  Phvul.004G105800.1 215 ADSWAWRKYGQKPIKGSPYPRNYYRCSSCkGCAARKQVERSTTEPNTFIVTYTGDHKHA 273
                         69************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-29200275IPR003657WRKY domain
PROSITE profilePS5081131.399209275IPR003657WRKY domain
SuperFamilySSF1182906.93E-25209275IPR003657WRKY domain
SMARTSM007741.2E-32214274IPR003657WRKY domain
PfamPF031066.5E-24216272IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MTHEDWDLFA IVRSCKAATF TATTNTENPP TMTSTTTSFS PNTTSCLDVS QDNGSFSFPN  60
LVQPTTNDFQ ELHQLLINFN PTNTTISSTI TSAVGINPNS TFSDAAGFIG QQHIQQAHHH  120
HLVPAPTNHS SIGAPSTTGF DRFQHHHHHY PHHQQQHQPQ TPEQQQHKQN QPQLQAPQTS  180
PVLSPTTQPQ TPRSRKRKTQ QKKMVCHVTA DNLSADSWAW RKYGQKPIKG SPYPRNYYRC  240
SSCKGCAARK QVERSTTEPN TFIVTYTGDH KHAKPVHRNS LAGSTRTKPS PASLPETHEA  300
VSCIKIQNAC SSTSELSTTS LRSGTPENEE MVAAGEPDFL EMEVDPDALS ENDYDLLIPN  360
TGAMSDAVLL GLTNGAETKA SDPNSDSGLT RSKSDPFYNP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-172122751577Probable WRKY transcription factor 4
2lex_A2e-172122751577Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193198SRKRKT
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G105800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007152141.10.0hypothetical protein PHAVU_004G105800g
TrEMBLV7C4F30.0V7C4F3_PHAVU; Uncharacterized protein
STRINGXP_007152141.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.14e-52WRKY DNA-binding protein 27