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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.004G095400.1 |
Common Name | PHAVU_004G095400g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
Trihelix |
Protein Properties |
Length: 657aa MW: 72575.6 Da PI: 5.1793 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.004G095400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 92 | 6.1e-29 | 69 | 152 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k+++ g++r++k+Ckek+en+ k++k++keg++++t+++ t+++fdql+
Phvul.004G095400.1 69 RWPRQETLALLKIRSDMDVAFRDASVKGPLWEEVSRKLADLGYHRNAKKCKEKFENVYKYHKRTKEGRSGKTEGK--TYRFFDQLQ 152
8********************************************************************986665..5******98 PP
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2 | trihelix | 104.6 | 7.2e-33 | 475 | 560 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
rW+k ev+aLi++r+++e++++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
Phvul.004G095400.1 475 RWPKMEVQALIDLRTNLETKYQENGPKGPLWEEISSLMRKMGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 560
8*********************************************************************8.99***********85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 657 aa
Download sequence Send
to blast |
MLGDSAVLGT GGGGGSGDAV VAVGGGAASG GAHDGAVDVA GGGGGGGSNS GDDERGRVEE 60 GDRSFGGNRW PRQETLALLK IRSDMDVAFR DASVKGPLWE EVSRKLADLG YHRNAKKCKE 120 KFENVYKYHK RTKEGRSGKT EGKTYRFFDQ LQALENNPAI HAIQSPTPPS KPPPVTTTPL 180 PATPVSIVVT TTPSSIMSLP PTTTVPLPPV SNNATVPSTT TLPIPQAILA LTTSSYPSSN 240 PTTYFPTQTP NPTTNNTNNK NPPSFPNIPT DLLSNSSSSS TSSEETTTEG GGARRKRKRK 300 WKDFFERLMK EVIEKQEELQ RRFLEAIEKR EQERVTREES WRMQEMQRIN REREILAQER 360 SIAAAKDAAV MAFLQKMAEH QQEENNLQPA LNTNNNNSIT IASQQPVPQA TPTPTPQQKQ 420 TTTVPETPPV QSLAPQPQQQ QHQVQQQQQL VVTNVEINKA DNNGENLMMG ASSSRWPKME 480 VQALIDLRTN LETKYQENGP KGPLWEEISS LMRKMGYNRN AKRCKEKWEN INKYFKKVKE 540 SNKKRPEDSK TCPYFHQLEA LYKEKNKVEG QMKPESMMAP LMVQPEQQWP PQQVVPPEIT 600 MEDAQNDPMD ARNHEDAEEE EEDKEIADED DDEDDEGGSY EIVASKPASA GDGSAE*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 293 | 298 | RRKRKR |
2 | 293 | 299 | RRKRKRK |
3 | 294 | 299 | RKRKRK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |