PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G095200.1 | ||||||||
Common Name | PHAVU_004G095200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | Trihelix | ||||||||
Protein Properties | Length: 591aa MW: 67136.5 Da PI: 5.318 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 88.2 | 9.5e-28 | 62 | 145 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r++m+ +r++ lk+plWeevs+k++ g+ rs+k+Ckek+en+ k+ k++ke+++++ + +t+++fdql+ Phvul.004G095200.1 62 RWPRQETLALLKIRSDMDAVFRDSTLKGPLWEEVSRKLAGLGYDRSAKKCKEKFENVYKYNKRTKESKSGK--SHGKTYKFFDQLQ 145 8********************************************************************96..55567******98 PP | |||||||
2 | trihelix | 103 | 2.3e-32 | 408 | 493 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r++++++++++ k+plWe++s++m++ g++rs+k+Ckekwen+nk++kk++e++k+r e+s+tcpyf++l+a Phvul.004G095200.1 408 RWPKPEVHALIRLRTSLDTKYQENGPKAPLWEDISIAMQRLGYNRSAKRCKEKWENINKYFKKVRENNKER-RENSKTCPYFHELDA 493 8*********************************************************************8.78889********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.969 | 55 | 119 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.029 | 59 | 121 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.84E-23 | 61 | 126 | No hit | No description |
Pfam | PF13837 | 1.1E-18 | 61 | 147 | No hit | No description |
PROSITE profile | PS50090 | 7.236 | 401 | 465 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.11 | 405 | 467 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 7.3E-22 | 407 | 494 | No hit | No description |
CDD | cd12203 | 1.55E-25 | 408 | 472 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 591 aa Download sequence Send to blast |
MQPGDSSVLE ISSHNEPEMA VAAEGAAHGG EVDGGDEMIG MDVDAISGEG NEGNKMSFGG 60 NRWPRQETLA LLKIRSDMDA VFRDSTLKGP LWEEVSRKLA GLGYDRSAKK CKEKFENVYK 120 YNKRTKESKS GKSHGKTYKF FDQLQALENQ FTISYPPKPQ PTLATTNTLT LPARQSDVGN 180 NNVISYVTPF PSTNPTLISP SPQTNTPTIS TRDTSPPPQT TTTNNDNVTY SLPNMNTPFS 240 TTTTTSTSSS TASDEDLEER YRRKRKWKDY FRRLTRKVLL KQEEMQKKFL EAMDKRERER 300 VTQQDNWRMQ EMARINREHE ILVQERSTAA AKDAAVIALL QKMYGQQNTT QHVQVQPPEQ 360 QKQTMLQSEA PTLMSNNNHF EIKKMNNGHS ATGISTTTVT TSPASSSRWP KPEVHALIRL 420 RTSLDTKYQE NGPKAPLWED ISIAMQRLGY NRSAKRCKEK WENINKYFKK VRENNKERRE 480 NSKTCPYFHE LDAIYKEKSL SQNPFGVFQN MKPNEMMMME PLMVQPEQQW RPPPQSLEEG 540 TEKNGSEEYQ KKEEENGDGG NDDDDDDVDD DVEEDEDGVE DEACETGTNN * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G095200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007152025.1 | 0.0 | hypothetical protein PHAVU_004G095200g | ||||
TrEMBL | V7C1J1 | 0.0 | V7C1J1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007152025.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF373 | 34 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 1e-117 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G095200.1 |
Entrez Gene | 18632539 |