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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.004G090300.1 |
Common Name | PHAVU_004G090300g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
bHLH |
Protein Properties |
Length: 405aa MW: 45723.7 Da PI: 5.5533 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.004G090300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 43.5 | 5.7e-14 | 251 | 296 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+h e+Er+RR+++N++f Lr+ +P+ K++Ka+ L Av+YI++L
Phvul.004G090300.1 251 NHVEAERQRREKLNQRFYALRSAVPNV-----SKMDKASLLSDAVDYINEL 296
799***********************6.....5***************998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 405 aa
Download sequence Send
to blast |
MKGKGREFID SASSSVLSNA LQQRLQFILQ TRPEWWVYAI FWQATKESDS RLTLEYGDGF 60 YMGSKGREGT EVRMSEEQTR NHVNDIEWFY RVSQTRSYAA GDGVVGCAFG SGVDVWLSGV 120 NEFEVNECDE RVGEARRHGI QTLVCVSVAR GILELGSHEV LKLDYGVLQM VKSVFEEREC 180 GSENPVRRRW MVVPGKEKEK ERRRELEGSS TDSSGPSDHD AEALLAFVEA NNSVPMMGRR 240 AGRERETLPV NHVEAERQRR EKLNQRFYAL RSAVPNVSKM DKASLLSDAV DYINELKAKI 300 SQLQSALEAE PEAQAQTQAQ PSSATTDMRV EVQMLGSEAM IRVQSLNINH PWARLMDALR 360 DVNLEILHAT ISNIKEMMLQ DVVVRVPHDL MTQEALQTAI MRRL*
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5gnj_A | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_B | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_E | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_F | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_G | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_I | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_M | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
5gnj_N | 1e-24 | 242 | 305 | 2 | 62 | Transcription factor MYC2 |
Search in ModeBase |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |