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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.004G077400.1 |
Common Name | PHAVU_004G077400g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 344aa MW: 39152.4 Da PI: 8.9913 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.004G077400.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 171.5 | 2.6e-53 | 9 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdeel+ +yL+kkv++ +l + ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
Phvul.004G077400.1 9 LPPGFRFHPTDEELILHYLRKKVASIPLAV-SIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKN 98
79*************************999.89***************988899************************************* PP
NAM 92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
++++ +e+ g+kk Lvfykgr pkg+kt+W+mheyrl
Phvul.004G077400.1 99 IVASlaggVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRL 139
***998776677***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MGTPQSNNLP PGFRFHPTDE ELILHYLRKK VASIPLAVSI IAEVDIYKCD PWELPAKAAF 60 GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKNIV ASLAGGVREH FGVKKALVFY 120 KGRPPKGVKT NWIMHEYRLV DTNKPVRIKD TSMRLDDWVL CRIYKKSKHS LSSITEAAQT 180 TLEEQIKDTL LPISNTTTTL VPPPQATLIS QKSLSFSNLL DATDFSMLST ILSENQYSNY 240 PNTNEPLFGC ENLDHETPQN YYTNNNSFNN VQKNPSLITH ILPKHHLSNI DEDIMHPSKQ 300 HHGSSCNFPN TTLQNQNPQW NFMFKQPHMN HQLLPGPQYL QFQ*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 2e-71 | 8 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-71 | 8 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-71 | 8 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-71 | 8 | 166 | 16 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_B | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_C | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swm_D | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_A | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_B | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_C | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
3swp_D | 2e-71 | 8 | 166 | 19 | 168 | NAC domain-containing protein 19 |
4dul_A | 2e-71 | 8 | 166 | 16 | 165 | NAC domain-containing protein 19 |
4dul_B | 2e-71 | 8 | 166 | 16 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU661910 | 1e-152 | EU661910.1 Glycine max NAC domain protein (NAC8) mRNA, partial cds. |