PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G077400.1
Common NamePHAVU_004G077400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 344aa    MW: 39152.4 Da    PI: 8.9913
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G077400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-5391391128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeel+ +yL+kkv++ +l + ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+
  Phvul.004G077400.1   9 LPPGFRFHPTDEELILHYLRKKVASIPLAV-SIIAEVDIYKCDPWELPAKAAFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKN 98 
                         79*************************999.89***************988899************************************* PP

                 NAM  92 vlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++++     +e+ g+kk Lvfykgr pkg+kt+W+mheyrl
  Phvul.004G077400.1  99 IVASlaggVREHFGVKKALVFYKGRPPKGVKTNWIMHEYRL 139
                         ***998776677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-646166IPR003441NAC domain
PROSITE profilePS5100561.4939166IPR003441NAC domain
PfamPF023651.2E-2710139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGTPQSNNLP PGFRFHPTDE ELILHYLRKK VASIPLAVSI IAEVDIYKCD PWELPAKAAF  60
GEKEWYFFSP RDRKYPNGAR PNRAAASGYW KATGTDKNIV ASLAGGVREH FGVKKALVFY  120
KGRPPKGVKT NWIMHEYRLV DTNKPVRIKD TSMRLDDWVL CRIYKKSKHS LSSITEAAQT  180
TLEEQIKDTL LPISNTTTTL VPPPQATLIS QKSLSFSNLL DATDFSMLST ILSENQYSNY  240
PNTNEPLFGC ENLDHETPQN YYTNNNSFNN VQKNPSLITH ILPKHHLSNI DEDIMHPSKQ  300
HHGSSCNFPN TTLQNQNPQW NFMFKQPHMN HQLLPGPQYL QFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-71816616165NO APICAL MERISTEM PROTEIN
1ut4_B2e-71816616165NO APICAL MERISTEM PROTEIN
1ut7_A2e-71816616165NO APICAL MERISTEM PROTEIN
1ut7_B2e-71816616165NO APICAL MERISTEM PROTEIN
3swm_A2e-71816619168NAC domain-containing protein 19
3swm_B2e-71816619168NAC domain-containing protein 19
3swm_C2e-71816619168NAC domain-containing protein 19
3swm_D2e-71816619168NAC domain-containing protein 19
3swp_A2e-71816619168NAC domain-containing protein 19
3swp_B2e-71816619168NAC domain-containing protein 19
3swp_C2e-71816619168NAC domain-containing protein 19
3swp_D2e-71816619168NAC domain-containing protein 19
4dul_A2e-71816616165NAC domain-containing protein 19
4dul_B2e-71816616165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G077400.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619101e-152EU661910.1 Glycine max NAC domain protein (NAC8) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151816.10.0hypothetical protein PHAVU_004G077400g
SwissprotQ84TD61e-100NAC47_ARATH; NAC transcription factor 47
TrEMBLV7C3D80.0V7C3D8_PHAVU; Uncharacterized protein
STRINGXP_007151816.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-102NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]