PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G075500.1
Common NamePHAVU_004G075500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 211aa    MW: 24028.8 Da    PI: 9.469
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G075500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.41.1e-30151311128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lp GfrF Ptd+el+ +yLk+k+ + +l++ +vi+++d+++++Pw Lp  +   +++ yfFs+  k       +++++ sg Wk  gk+ke
  Phvul.004G075500.1  15 LPIGFRFCPTDQELLLHYLKNKAFALQLPA-SVISDCDVFQTDPWLLPGDL---REKRYFFSNCGKV------NKKSAGSGCWKCVGKEKE 95 
                         699***************************.99***************544...4578****98775......4567899*********** PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         + +  ++e++g+kktL+f kg++ +  +t+Wvmh+ rl
  Phvul.004G075500.1  96 IRRCeSNEVIGMKKTLMFCKGSNDT--RTRWVMHQLRL 131
                         *98757788**********887776..9*******886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3710153IPR003441NAC domain
PROSITE profilePS5100535.99915153IPR003441NAC domain
PfamPF023658.4E-2016131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MERLQGFVVK GGIKLPIGFR FCPTDQELLL HYLKNKAFAL QLPASVISDC DVFQTDPWLL  60
PGDLREKRYF FSNCGKVNKK SAGSGCWKCV GKEKEIRRCE SNEVIGMKKT LMFCKGSNDT  120
RTRWVMHQLR LLTSYPYQQM AVGDFAVYVI FQKRKKTKTS NRRVSSSRKL ERVDDVKASM  180
MDFKVEFGDD NIELPPPSSP SLSEDCSETT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-211313215143NO APICAL MERISTEM PROTEIN
1ut4_B1e-211313215143NO APICAL MERISTEM PROTEIN
1ut7_A1e-211313215143NO APICAL MERISTEM PROTEIN
1ut7_B1e-211313215143NO APICAL MERISTEM PROTEIN
4dul_A1e-211313215143NAC domain-containing protein 19
4dul_B1e-211313215143NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G075500.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150443e-85AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151796.11e-157hypothetical protein PHAVU_004G075500g
TrEMBLV7C3C31e-155V7C3C3_PHAVU; Uncharacterized protein
STRINGXP_007151796.11e-156(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-37NAC domain containing protein 83