PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.004G072500.1 | ||||||||
Common Name | PHAVU_004G072500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 245aa MW: 26185.2 Da PI: 6.9268 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.8 | 1.9e-38 | 48 | 149 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkC +C++ap+f +q ++kfa+vhk+FGasnv+kll+++p ++r++a++++ yeA+ar++dPvyG+v++il+lqqq++++ Phvul.004G072500.1 48 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATTISYEAQARLSDPVYGCVSTILSLQQQVASM 138 7***********************9989*************************************************************** PP DUF260 91 kaelallkeel 101 +ae+a+++++l Phvul.004G072500.1 139 QAEVAMVQTQL 149 ******99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.339 | 47 | 149 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-38 | 48 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MSEPHDLNTN GGDHSAGSGS RRRGPGFRRA MATQTQDEPM LGTSPATPCG ACKFLRRKCI 60 GGCIFAPHFG TDQGAAKFAA VHKVFGASNV SKLLSNIPAN RRHEAATTIS YEAQARLSDP 120 VYGCVSTILS LQQQVASMQA EVAMVQTQLM NSRFAYASAL ESTQVQQPNM NAAALQPAYS 180 NNSCASTNLM NLSSFNNNPA GFDLAMHTAP SSSTLEPLQL TRLSKCEEDE EEEESRTQPG 240 FSHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 48 | 155 | 11 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 48 | 155 | 11 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.004G072500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-130 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151760.1 | 0.0 | hypothetical protein PHAVU_004G072500g | ||||
Swissprot | Q9SRV3 | 6e-68 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | V7C0V5 | 0.0 | V7C0V5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151760.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7715 | 31 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 2e-69 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.004G072500.1 |
Entrez Gene | 18632303 |