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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.004G072500.1 |
Common Name | PHAVU_004G072500g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
LBD |
Protein Properties |
Length: 245aa MW: 26185.2 Da PI: 6.9268 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.004G072500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 122.8 | 1.9e-38 | 48 | 149 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90
+C aCk+lrrkC +C++ap+f +q ++kfa+vhk+FGasnv+kll+++p ++r++a++++ yeA+ar++dPvyG+v++il+lqqq++++
Phvul.004G072500.1 48 PCGACKFLRRKCIGGCIFAPHFGTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATTISYEAQARLSDPVYGCVSTILSLQQQVASM 138
7***********************9989*************************************************************** PP
DUF260 91 kaelallkeel 101
+ae+a+++++l
Phvul.004G072500.1 139 QAEVAMVQTQL 149
******99885 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
Protein Sequence Length: 245 aa
Download sequence Send
to blast |
MSEPHDLNTN GGDHSAGSGS RRRGPGFRRA MATQTQDEPM LGTSPATPCG ACKFLRRKCI 60 GGCIFAPHFG TDQGAAKFAA VHKVFGASNV SKLLSNIPAN RRHEAATTIS YEAQARLSDP 120 VYGCVSTILS LQQQVASMQA EVAMVQTQLM NSRFAYASAL ESTQVQQPNM NAAALQPAYS 180 NNSCASTNLM NLSSFNNNPA GFDLAMHTAP SSSTLEPLQL TRLSKCEEDE EEEESRTQPG 240 FSHH*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015044 | 1e-130 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |