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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.004G064700.1 |
Common Name | PHAVU_004G064700g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
LBD |
Protein Properties |
Length: 276aa MW: 29897 Da PI: 8.4859 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.004G064700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 100.1 | 2.1e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86
+C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++q
Phvul.004G064700.1 4 SCNGCRVLRKGCSEDCSIRPCLewiknPESQANATVFLAKFYGRAGLLNLINAGPQQLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQ 94
6****************************************************************************************** PP
DUF260 87 leqlkaelallke 99
l+q+++e++l++e
Phvul.004G064700.1 95 LCQAAVEAVLRGE 107
******9988765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 276 aa
Download sequence Send
to blast |
MRMSCNGCRV LRKGCSEDCS IRPCLEWIKN PESQANATVF LAKFYGRAGL LNLINAGPQQ 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLRGESVT PITSEVAANG 120 RAPPLKAYDI RHVSKDENSA NRSQKGKSRI RVKRTGGDVV IKPKGSEGIG FGPVEPETKQ 180 TRSHESGLSH LSEAAAILEG ESKESESVVS VETGNLFGET KMSDRIDESG NEIGLELRLG 240 FEPVSRVHHM VPMKKRRIEV KSSGDSMELG LESSA*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |