![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.004G060900.1 | ||||||||
Common Name | PHAVU_004G060900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 28223 Da PI: 6.1667 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35 | 1.9e-11 | 9 | 51 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 k i+n+ r++tf +R+ g++KK +E S C+ e ++i+f + Phvul.004G060900.1 9 KHISNEKFRKTTFLRRKRGLMKKISEFSNKCGGEHCLIVFDDD 51 689************************************9766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.9E-8 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.965 | 1 | 52 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-15 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-5 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.0E-12 | 11 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.2E-5 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 248 aa Download sequence Send to blast |
MGRARITLKH ISNEKFRKTT FLRRKRGLMK KISEFSNKCG GEHCLIVFDD DNGDVGPVTS 60 PQNPVQVHSM IQKYYSQIKN ERPHKTYGIE EFLENRKNMI ETEISRVDKH ISSIKYPTLD 120 PSIIIMEEDQ LRAFCAHVDA KIEACDRGIK LLKDQSQGFV PNMARENATA STSHPNQVNY 180 LQSISQSEAL LDDFFKQLND KNYGMVDFSS SVDVPLNSTN ELSDLEFEEL MMGLSSVDWP 240 YQAFCGL* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.004G060900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007151603.1 | 0.0 | hypothetical protein PHAVU_004G060900g | ||||
TrEMBL | V7C092 | 0.0 | V7C092_PHAVU; Uncharacterized protein | ||||
STRING | XP_007151603.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-11 | M-type_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.004G060900.1 |
Entrez Gene | 18632178 |