PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G053600.1
Common NamePHAVU_004G053600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 386aa    MW: 42639.8 Da    PI: 6.4399
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G053600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-18111156147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed++l+++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  Phvul.004G053600.1 111 RGHWRPVEDDKLKELVAQFGPQNWNSIAEHLP-GRSGKSCRLRWFNQ 156
                         899*****************************.***********996 PP
2Myb_DNA-binding55.61.2e-17163206146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r+++++eE+e+l++a+k +G++ W+ I+r ++ gRt++ +k++w+ 
  Phvul.004G053600.1 163 RKAFSEEEEERLLNAHKVYGNK-WAMISRLFP-GRTDNAVKNHWHV 206
                         789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.381106157IPR017930Myb domain
SMARTSM007171.4E-15110159IPR001005SANT/Myb domain
PfamPF002491.2E-17111156IPR001005SANT/Myb domain
SuperFamilySSF466891.27E-28111204IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-26112164IPR009057Homeodomain-like
CDDcd001671.56E-14114155No hitNo description
PROSITE profilePS5129425.356158212IPR017930Myb domain
SMARTSM007171.1E-14162210IPR001005SANT/Myb domain
PfamPF002494.5E-14163205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-20165210IPR009057Homeodomain-like
CDDcd001679.16E-12165205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSTSLHFRNS GCGFSAEMNV FSSPPVPVLA LQCSNTLGFM GGGTEAESSD MPFQKSNFSV  60
IKHQEELEEE EEEEESFGVE NKSLSLKPGE ELEANSSSAT GKIRETKLCA RGHWRPVEDD  120
KLKELVAQFG PQNWNSIAEH LPGRSGKSCR LRWFNQLDPR INRKAFSEEE EERLLNAHKV  180
YGNKWAMISR LFPGRTDNAV KNHWHVIMAR RQREKSCVYK RRKPTFQILP PKDLDLTLPM  240
NGSSESTISS TIIDESASTG TNLSFTPSSA KPTPLPFHNP CPVQNLQAFG ALMGLSGESG  300
RLAREVGFGM YFGAWKGSFE AGHNMGRLIG VDHCYYSESN SSEVSVCESV ATNSTTNLSI  360
SRENENMGHN KANMIFIDFL GVGAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-331112117107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209223RRQREKSCVYKRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G053600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-177AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151516.10.0hypothetical protein PHAVU_004G053600g
TrEMBLV7C2I80.0V7C2I8_PHAVU; Uncharacterized protein
STRINGXP_007151516.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.13e-66myb domain protein 105