PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G046000.1
Common NamePHAVU_004G046000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 350aa    MW: 39192.7 Da    PI: 5.955
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G046000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.68.8e-163683148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g W++eEde+l+++    G g+W+ Iar  g+ R++k+c++rw +yl
  Phvul.004G046000.1 36 KGLWSPEEDEKLIRYMITKGQGCWSDIARNAGLQRCGKSCRLRWINYL 83
                        678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1689133147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++ 
  Phvul.004G046000.1  89 RGAFSPQEEELIIHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNST 133
                         89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.43183IPR017930Myb domain
SuperFamilySSF466892.09E-2834130IPR009057Homeodomain-like
SMARTSM007175.4E-133585IPR001005SANT/Myb domain
PfamPF002493.0E-143683IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-233790IPR009057Homeodomain-like
CDDcd001672.72E-113983No hitNo description
PROSITE profilePS5129426.12684138IPR017930Myb domain
SMARTSM007171.8E-1688136IPR001005SANT/Myb domain
PfamPF002493.0E-1589133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2691138IPR009057Homeodomain-like
CDDcd001679.24E-1291134No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MRKPDIMGKD KLNTSSSTTT TTINTTNNST KSKLRKGLWS PEEDEKLIRY MITKGQGCWS  60
DIARNAGLQR CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSILGNR WSQIAARLPG  120
RTDNEIKNFW NSTLKKRLKM SNNNNTTSSP NNSDSSDPRD VMGGIMPMNE HDLMTMCMDS  180
SSSTSSSSMH SMQANMALTD QFDPFPLLSN RYDMTTGAAG FLDNMAACLT QVGMADHDDG  240
VVHGDYGALE PNKMGLESDF SLPPLESRSN IEDNSTTPID VKTHNNNHFK NSCFNNTDLH  300
IQTSNNVVAE DMFGFGNHHG QGENFRMGEW DFEGLMQDMS YFPSLDFQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28341385108B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139LKKRLKM
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as molecular switch in the NAC012/SND1-mediated transcriptional network regulating secondary wall biosynthesis. Is directly activated by NAC012/SND1 and its close homologs, including NAC043/NST1, NAC066/NST2, NAC101/VND6 and NAC030/VND7. Is required for functional expression of a number of secondary wall-associated transcription factors and secondary wall biosynthetic genes involved in cellulose, xylan and lignin synthesis. Functions redundantly with MYB46 in the transcriptional regulatory cascade leading to secondary wall formation in fibers and vessels (PubMed:19808805). Transcription activator that binds to the DNA consensus sequence 5'-ACC[AT]A[AC][TC]-3', designated as the secondary wall MYB-responsive element (SMRE). Regulates directly numerous transcription factors and a number of genes involved in secondary wall biosynthesis that contain SMRE elements in their promoters (PubMed:22197883). {ECO:0000269|PubMed:19808805, ECO:0000269|PubMed:22197883}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G046000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151435.10.0hypothetical protein PHAVU_004G046000g
SwissprotQ9C6U15e-82MYB83_ARATH; Transcription factor MYB83
TrEMBLV7BZV20.0V7BZV2_PHAVU; Uncharacterized protein
STRINGXP_007151435.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77434128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08500.13e-73myb domain protein 83
Publications ? help Back to Top
  1. Vargas L, et al.
    Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants.
    Biotechnol Biofuels, 2016. 9: p. 139
    [PMID:27390589]
  2. Piya S,Kihm C,Rice JH,Baum TJ,Hewezi T
    Cooperative Regulatory Functions of miR858 and MYB83 during Cyst Nematode Parasitism.
    Plant Physiol., 2017. 174(3): p. 1897-1912
    [PMID:28512179]