PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G028500.1
Common NamePHAVU_004G028500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 318aa    MW: 35162.5 Da    PI: 8.4506
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G028500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171360148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT+eEd +lv +++ +G+g+Wk++++  g+ R+ k+c++rw +yl
  Phvul.004G028500.1 13 KGPWTPEEDIILVSYIQDHGPGNWKAVPANTGLSRCSKSCRLRWTNYL 60
                        79********************************************97 PP
2Myb_DNA-binding50.54.9e-1666111148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rg++T++E++ ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
  Phvul.004G028500.1  66 RGNFTEQEEKMIIHLQALLGNR-WAAIAAYLP-QRTDNDIKNFWNTYL 111
                         89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.35864IPR017930Myb domain
SuperFamilySSF466891.8E-3010107IPR009057Homeodomain-like
SMARTSM007174.5E-151262IPR001005SANT/Myb domain
PfamPF002493.7E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-231467IPR009057Homeodomain-like
CDDcd001671.58E-111560No hitNo description
SMARTSM007171.6E-1565113IPR001005SANT/Myb domain
PROSITE profilePS5129420.32165115IPR017930Myb domain
PfamPF002491.8E-1566111IPR001005SANT/Myb domain
CDDcd001673.14E-1168111No hitNo description
Gene3DG3DSA:1.10.10.609.9E-2568116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGRPPCCDKG VKKGPWTPEE DIILVSYIQD HGPGNWKAVP ANTGLSRCSK SCRLRWTNYL  60
RPGIKRGNFT EQEEKMIIHL QALLGNRWAA IAAYLPQRTD NDIKNFWNTY LKKKLNKLEA  120
SGSEGSLGQV GVSVSQSMSR GQWERRLQTD IHMAKKALSE ALSPKKTSSS TLFAELNSNL  180
SNDNTGSFYN STKPTQSMSY ASSADNIARL LKGWMKNTPK RAATQNSFIN LVGSDTASSD  240
GTTKGSTNRV ELSETFETLF GYESLESSNS EFSPSLSPEG TLFQDESKPD IVGIDMPFSL  300
LEKWLLDDTS CQEKLSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C4e-261311558159MYB PROTO-ONCOGENE PROTEIN
1h89_C4e-261311558159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-261311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G028500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151227.10.0hypothetical protein PHAVU_004G028500g
SwissprotP813921e-111MYB06_ANTMA; Myb-related protein 306
TrEMBLV7C2X30.0V7C2X3_PHAVU; Uncharacterized protein
STRINGXP_007151227.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-104myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]