PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G028300.1
Common NamePHAVU_004G028300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 377aa    MW: 43075.5 Da    PI: 6.9826
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G028300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.75.3e-54141392128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                         +pGfrFhPtdeelv++yLk+k+++k+l++ e ik+vdiyk++PwdLpk + ++ekewyf+++rd+ky+++ r+nr+t++g+Wkatg+d+++
  Phvul.004G028300.1  14 MPGFRFHPTDEELVDFYLKRKIQQKSLPI-ELIKQVDIYKYDPWDLPKLAGTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPI 103
                         79***************************.89***************9888999************************************* PP

                 NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +s++g+ +glkk+Lvfy+gra kg ktdW+mhe+rl
  Phvul.004G028300.1 104 YSSDGKCIGLKKSLVFYRGRAAKGMKTDWMMHEFRL 139
                         **********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-5711170IPR003441NAC domain
PROSITE profilePS5100556.23613170IPR003441NAC domain
PfamPF023654.9E-2615139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEERNEMEKI DDVMPGFRFH PTDEELVDFY LKRKIQQKSL PIELIKQVDI YKYDPWDLPK  60
LAGTGEKEWY FYCPRDRKYR NSARPNRVTR AGFWKATGTD RPIYSSDGKC IGLKKSLVFY  120
RGRAAKGMKT DWMMHEFRLP CISDSAPSKK LSDKSLPPTD SWAICRIFKK TNSLSMAQKA  180
LSHPWISQLS GSMVSDMFTQ GATNHHLGSP PAIQFCDERQ ELHQVSNNDI NTNFTASDMP  240
NYKPINSTTA PKPSPEIPVS DGDLADNFIF YTEHTKCTLD ASSMLSPNPD YITFQEPNQQ  300
QYSVFSNNLP HYIQQNMTTE TVTKEQQDWE TIGRTTGFPF TLLPPHDAWK SSSVAWDSPP  360
CPSDMSTTYS TNKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-5411733171Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G028300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151225.10.0hypothetical protein PHAVU_004G028300g
TrEMBLV7BZB20.0V7BZB2_PHAVU; Uncharacterized protein
STRINGXP_007151225.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.12e-98NAC domain containing protein 94