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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.004G017500.1 |
Common Name | PHAVU_004G017500g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
HD-ZIP |
Protein Properties |
Length: 285aa MW: 32700.3 Da PI: 4.3355 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.004G017500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 63.4 | 3.2e-20 | 66 | 119 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq++ Le+ Fe+++++ e++++LAk lgL+ rqV vWFqNrRa++k
Phvul.004G017500.1 66 KKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKMLGLQPRQVAVWFQNRRARWK 119
67889************************************************9 PP
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2 | HD-ZIP_I/II | 133.3 | 8.8e-43 | 65 | 156 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekk+rls+eqv+lLE+sFeee+kLeperK++la+ LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l ++ ++L k++e+L++e+
Phvul.004G017500.1 65 EKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKMLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKDNEKLKSEV 155
69**************************************************************************************998 PP
HD-ZIP_I/II 92 k 92
Phvul.004G017500.1 156 V 156
6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001558 | Biological Process | regulation of cell growth |
GO:0009637 | Biological Process | response to blue light |
GO:0009651 | Biological Process | response to salt stress |
GO:0009965 | Biological Process | leaf morphogenesis |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 285 aa
Download sequence Send
to blast |
MESGRLFFDA CASRGNTNML FLGNTELAFR GRSMMSLEEA SKRRPFFTSP DELYDEEYYE 60 KQMPEKKHRL SSEQVHLLEK SFEEENKLEP ERKTQLAKML GLQPRQVAVW FQNRRARWKT 120 KQLERDFDVL KSSYDTLLSS YDSLMKDNEK LKSEVVSLNE KLQDQAKEVP EEPFYDKKVD 180 PLPVEDIATI FSTRVEDHQS SGSVGSAVVD EGSPQLVVDS VDSYLPADNP GGCVGPVERI 240 QSEEEDGSDD GRSYMDVFVV SETENQNHEE GEALVWWTNM YYVE*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 113 | 121 | RRARWKTKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF402606 | 0.0 | AF402606.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ3 mRNA, partial cds. |