PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G017500.1
Common NamePHAVU_004G017500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32700.3 Da    PI: 4.3355
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G017500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.2e-2066119356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k++++++eq++ Le+ Fe+++++  e++++LAk lgL+ rqV vWFqNrRa++k
  Phvul.004G017500.1  66 KKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKMLGLQPRQVAVWFQNRRARWK 119
                         67889************************************************9 PP

2HD-ZIP_I/II133.38.8e-4365156192
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekk+rls+eqv+lLE+sFeee+kLeperK++la+ LglqprqvavWFqnrRAR+ktkqlE+d+++Lk++yd+l ++ ++L k++e+L++e+
  Phvul.004G017500.1  65 EKKHRLSSEQVHLLEKSFEEENKLEPERKTQLAKMLGLQPRQVAVWFQNRRARWKTKQLERDFDVLKSSYDTLLSSYDSLMKDNEKLKSEV 155
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 k 92 
                          
  Phvul.004G017500.1 156 V 156
                         6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-2053123IPR009057Homeodomain-like
PROSITE profilePS5007118.0161121IPR001356Homeobox domain
SMARTSM003895.5E-1963125IPR001356Homeobox domain
PfamPF000461.7E-1766119IPR001356Homeobox domain
CDDcd000862.78E-1866122No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2167128IPR009057Homeodomain-like
PRINTSPR000311.1E-592101IPR000047Helix-turn-helix motif
PROSITE patternPS00027096119IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5101117IPR000047Helix-turn-helix motif
PfamPF021835.2E-18121163IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001558Biological Processregulation of cell growth
GO:0009637Biological Processresponse to blue light
GO:0009651Biological Processresponse to salt stress
GO:0009965Biological Processleaf morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MESGRLFFDA CASRGNTNML FLGNTELAFR GRSMMSLEEA SKRRPFFTSP DELYDEEYYE  60
KQMPEKKHRL SSEQVHLLEK SFEEENKLEP ERKTQLAKML GLQPRQVAVW FQNRRARWKT  120
KQLERDFDVL KSSYDTLLSS YDSLMKDNEK LKSEVVSLNE KLQDQAKEVP EEPFYDKKVD  180
PLPVEDIATI FSTRVEDHQS SGSVGSAVVD EGSPQLVVDS VDSYLPADNP GGCVGPVERI  240
QSEEEDGSDD GRSYMDVFVV SETENQNHEE GEALVWWTNM YYVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00323DAPTransfer from AT3G01470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.004G017500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026060.0AF402606.1 Phaseolus vulgaris homeodomain leucine zipper protein HDZ3 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151094.10.0hypothetical protein PHAVU_004G017500g
SwissprotQ022835e-93HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLV7C1470.0V7C147_PHAVU; Uncharacterized protein
STRINGXP_007151094.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112833039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-84homeobox 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]