PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G287600.1
Common NamePHAVU_003G287600g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Dof
Protein Properties Length: 346aa    MW: 37122.3 Da    PI: 8.811
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G287600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.5e-392887261
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                        +e+ +kcprCds ntkfCyynnysl+qPr+fCk+CrryWt+GGalrnvP+Ggg+rknkk+
  Phvul.003G287600.1 28 PEQGVKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKKV 87
                        67899*****************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-262686IPR003851Zinc finger, Dof-type
PfamPF027011.2E-323086IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1713286IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103470IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MVPPEGMPPP TPKDHEVTEG RKTTRPAPEQ GVKCPRCDSP NTKFCYYNNY SLTQPRHFCK  60
TCRRYWTNGG ALRNVPIGGG CRKNKKVKPS SSSSSSSSKD FNFHGLTVPP SVDFNLGGLP  120
FPSRLTTFNT QQHLPAPPFN QFSSFGDVAS SSTTSLSAFS AFQDPPAAVS NPLLGLVPPS  180
PDLWAPRRSE RASLSDPLNS AMQTLQTMEA MNVHSSLASS IESLSNINQD LHLKLQQQRM  240
ATMMFGGDSQ KGERSVAMNG FGNQKVSSSK PENLPAVSSI NGGPSGETVT AASTEWFFGN  300
SFPSVSPSTS NGAANVNHIS NDPNNNWSSA LAWGDLQHQP YTALP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G287600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-178AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156457.10.0hypothetical protein PHAVU_003G287600g
TrEMBLV7CHR30.0V7CHR3_PHAVU; Uncharacterized protein
STRINGXP_007156457.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.15e-40Dof family protein