PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G286400.2 | ||||||||
Common Name | PHAVU_003G286400g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 36488.3 Da PI: 4.5022 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.8 | 6.9e-12 | 164 | 207 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Phvul.003G286400.2 164 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 207 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.491 | 158 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.8E-15 | 160 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-9 | 164 | 207 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.2E-12 | 164 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.53E-5 | 165 | 211 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 7.7E-15 | 165 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00583 | 252 | 292 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MELSQLGFLD ELVAPRRDTW NAFSTGFLDL LSNGWTFDTF LENPSLATSN SLFGAFSAPL 60 DRRSECPFIN DVPPYPFADG FAMPLPELHP GNDDPPPPLP PTMEDKEIAF HDNNNNSNNF 120 EETKGVCKVE EQGSEIPLFN IGMSDDGERK PKTKKLEGQP SKNLMAERRR RKRLNDRLSM 180 LRSIVPKISK MDRTSILGDT IDYMKELLER IGKLQEEEVE GGTSQINLLG ISKEQIKPNE 240 AMFDVERRDQ DTRISICCAT KPGLLLSTVN TLEALGLEIQ QCVVSSFNDF SMEASCSEVG 300 DQRNCIGPEE IKQSLFRNAG FVGKCL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 173 | ERRRRKRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G286400.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031112 | 0.0 | KT031112.1 Glycine max clone HN_CCL_214 bHLH transcription factor (Glyma08g37240.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156442.1 | 0.0 | hypothetical protein PHAVU_003G286400g | ||||
Swissprot | Q9LSL1 | 5e-74 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | V7CHP9 | 0.0 | V7CHP9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156443.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 5e-76 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G286400.2 |
Entrez Gene | 18636363 |
Publications ? help Back to Top | |||
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