PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G284500.2
Common NamePHAVU_003G284500g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 327aa    MW: 37123.4 Da    PI: 8.5957
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G284500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-13124175155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Phvul.003G284500.2 124 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 175
                         699***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.55E-12122179No hitNo description
SuperFamilySSF474594.32E-16122192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.589123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10124175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-13125189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-9129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MKTLVVVYFS QQVGKFRQVS VEERITMALE TLPSNEFSNF MVYDTISATP FSSHDSSEAS  60
FLESFGNYQE HDPSLDNCSM RTRKRQASEP EGIDRKQNVV GVQGRKKRRR KPRVCKNKEE  120
AETQRITHIT VERNRRKQMN EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQT  180
LEARKLQLLQ QEVAQTNENT AISKLMQPPF AQFFLYPQYT WSQNPNKYTS KTKAAIADIE  240
VTLIETHANL RILTRKTPAQ LTKLVSGFQN LHLTVLHLNV TTIDPLVFYS ISAKVEEGFQ  300
LGSVDGIASA VHHLLARIEE EALLCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110RKKRRRK
2104111RKKRRRKP
3105110KKRRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G284500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943130.0BT094313.1 Soybean clone JCVI-FLGm-24B24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156419.10.0hypothetical protein PHAVU_003G284500g
RefseqXP_007156420.10.0hypothetical protein PHAVU_003G284500g
SwissprotQ9C7T41e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLV7CGC60.0V7CGC6_PHAVU; Uncharacterized protein
STRINGXP_007156419.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.13e-63beta HLH protein 71
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]