PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G284500.1 | ||||||||
Common Name | PHAVU_003G284500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 327aa MW: 37123.4 Da PI: 8.5957 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.5 | 2.4e-13 | 124 | 175 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h +Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ Phvul.003G284500.1 124 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 175 699***************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.55E-12 | 122 | 179 | No hit | No description |
SuperFamily | SSF47459 | 4.32E-16 | 122 | 192 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.589 | 123 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.4E-10 | 124 | 175 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.7E-13 | 125 | 189 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-9 | 129 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MKTLVVVYFS QQVGKFRQVS VEERITMALE TLPSNEFSNF MVYDTISATP FSSHDSSEAS 60 FLESFGNYQE HDPSLDNCSM RTRKRQASEP EGIDRKQNVV GVQGRKKRRR KPRVCKNKEE 120 AETQRITHIT VERNRRKQMN EHLAVLRSLM PESYVQRGDQ ASIVGGAIEF VKELEHLLQT 180 LEARKLQLLQ QEVAQTNENT AISKLMQPPF AQFFLYPQYT WSQNPNKYTS KTKAAIADIE 240 VTLIETHANL RILTRKTPAQ LTKLVSGFQN LHLTVLHLNV TTIDPLVFYS ISAKVEEGFQ 300 LGSVDGIASA VHHLLARIEE EALLCC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 110 | RKKRRRK |
2 | 104 | 111 | RKKRRRKP |
3 | 105 | 110 | KKRRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G284500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094313 | 0.0 | BT094313.1 Soybean clone JCVI-FLGm-24B24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156419.1 | 0.0 | hypothetical protein PHAVU_003G284500g | ||||
Refseq | XP_007156420.1 | 0.0 | hypothetical protein PHAVU_003G284500g | ||||
Swissprot | Q9C7T4 | 1e-71 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | V7CGC6 | 0.0 | V7CGC6_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156419.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10644 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46690.1 | 3e-63 | beta HLH protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G284500.1 |
Entrez Gene | 18636342 |
Publications ? help Back to Top | |||
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