PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G283300.1 | ||||||||
Common Name | PHAVU_003G283300g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HSF | ||||||||
Protein Properties | Length: 475aa MW: 52777.7 Da PI: 4.6536 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.9 | 5.2e-36 | 28 | 119 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y++++d+++++++sws +nsf+v+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ Phvul.003G283300.1 28 FLSKTYDMVDDPSTDSIVSWSPANNSFIVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKH 109 9********************999*****************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++i r+k Phvul.003G283300.1 110 LLKTISRRKP 119 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.7E-40 | 22 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.71E-36 | 23 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 5.2E-64 | 24 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-20 | 28 | 51 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 5.5E-32 | 28 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-20 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 67 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.3E-20 | 79 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MEGAGSGGGE VSTAAPTPIP NANAPPPFLS KTYDMVDDPS TDSIVSWSPA NNSFIVWNPP 60 EFARDLLPKH FKHNNFSSFV RQLNTYGFRK VDPDRWEFAN EGFLRGQKHL LKTISRRKPA 120 HGHSHQQAQQ VHGQSSSVGA CVEVGKFGLE EEVEILKRDK NVLMQELVRL RQQQQSTDNQ 180 LQTMVQRLQG MEQRQQQMMS FLAKAVQSPG FLAQFVQQQN ESNRRITEAN KKRRLKQEGI 240 GEMEHTATSD GQIVKYQPLI NEAAKAMVRQ IMKLDASRLE SFSNNPDNYL IGDDHSSPSS 300 EMDRGNSLTR SSGVTLQEVP PTKVMSSYVP SATRTQGHGP SISSPTQTDE IMPDLSTIPD 360 IVAGNILDIP QENYMAPETG GDGYMDPASF GVDMSLPLDF NSISPEPDID DLLNNPNFWD 420 DIVRTPVSED IETNGGELFM ENELQPSENG WEKSQHMDLL TEQMGLLSSD VEKS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-28 | 7 | 117 | 4 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-28 | 7 | 117 | 4 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-28 | 7 | 117 | 4 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 229 | 236 | NKKRRLKQ |
2 | 230 | 235 | KKRRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G283300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007156403.1 | 0.0 | hypothetical protein PHAVU_003G283300g | ||||
Swissprot | Q40152 | 1e-170 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | V7CDY2 | 0.0 | V7CDY2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007156403.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-140 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G283300.1 |
Entrez Gene | 18636329 |
Publications ? help Back to Top | |||
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