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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Phvul.003G258100.1 |
| Common Name | PHAVU_003G258100g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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| Family |
SRS |
| Protein Properties |
Length: 309aa MW: 33688 Da PI: 7.1526 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.003G258100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 211.3 | 2.4e-65 | 100 | 239 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklss 93
+g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqqqla ++++++ ++++ skr+r+ +++t+l+s
Phvul.003G258100.1 100 EGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAVLQEQQQ--QQRDLSKRPRDP-------TACTRLPS 181
6889****************************************************976664..467778888875.......77888887 PP
DUF702 94 aeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+e le ++P+ vss+a frcvrvs v+d+++ +aYqtav+igGhvfkGiLyd+G+e+
Phvul.003G258100.1 182 SE---GLEEGHFPSLVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHVFKGILYDYGPEN 239
74...679999************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MANLFSLSGG RGSNNNQQDT TTNNEIPAAE TLFWYAKNDD VSSYRGFELW NQQQEQHVMP 60
PHVRPLLQRD LYSSGVGPSR GVSDDHSSSR SAFVAMRAAE GGISCQDCGN QAKKDCPHMR 120
CRTCCKSRGY DCQTHVKSTW VPASKRRERQ QQLAVLQEQQ QQQRDLSKRP RDPTACTRLP 180
SSEGLEEGHF PSLVSSPAEF RCVRVSCVED ADDRYAYQTA VNIGGHVFKG ILYDYGPENS 240
NNNNSNNSNN YMAGETSAGV AGAQPLNLTA SGVVSSSGAL VDPSSLYSAP VNTFMGGSGT 300
QFFPHTRS*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619, ECO:0000269|PubMed:20154152, ECO:0000269|PubMed:22318676}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269|PubMed:21976484}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT3G51060.1 | 8e-63 | Lateral root primordium (LRP) protein-related |
