 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Phvul.003G251800.3 |
| Common Name | PHAVU_003G251800g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 154aa MW: 18399.1 Da PI: 11.2892 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Phvul.003G251800.3 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 56.8 | 3.9e-18 | 46 | 99 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq++ Le+ F +++++ e++ +LA +lg++ rqV vWFqNrR ++k
Phvul.003G251800.3 46 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWK 99
66799************************************************9 PP
|
| 2 | HD-ZIP_I/II | 102.6 | 3.3e-33 | 46 | 130 | 2 | 86 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
kkr+ls+eqv+lLE++F ++kL++erK +la eLg++prqvavWFqnrR R+ktk+lE++y+ Lk+ +++ ++++L++ v++
Phvul.003G251800.3 46 KKRKLSAEQVNLLEKNFCIQHKLQSERKDQLAFELGMDPRQVAVWFQNRRFRWKTKKLEEEYSNLKNLHETTLLQKCHLQTRVSS 130
9******************************************************************************998754 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 154 aa
Download sequence Send
to blast |
MNHRAVEAHM RLFSHQYPTA FTQLTPPQQA KPRRKRNKNG VMGSTKKRKL SAEQVNLLEK 60
NFCIQHKLQS ERKDQLAFEL GMDPRQVAVW FQNRRFRWKT KKLEEEYSNL KNLHETTLLQ 120
KCHLQTRVSS SLTESQNQER RDLKDRRSID RKR*
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 33 | 48 | RKRNKNGVMGSTKKRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 1e-104 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
