PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G246800.1 | ||||||||
Common Name | PHAVU_003G246800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 177aa MW: 19594.5 Da PI: 7.3385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 113.4 | 1.5e-35 | 3 | 102 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C aCk++rr+C +dC +apyfpae+ ++fa+vh++FG nv+++lk++++e r+ ++++l+y+Aear+rdPv+G+vgvi + ++ l+ lk Phvul.003G246800.1 3 PCGACKYQRRRCGADCLMAPYFPAESIQRFAYVHHVFGGGNVSNILKSTKPELRKWTARALTYQAEARVRDPVHGCVGVICEQEESLRILK 93 7****************************************************************************************** PP DUF260 92 aelallkee 100 ++l+++k+e Phvul.003G246800.1 94 EKLEKAKRE 102 ***999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.197 | 2 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-34 | 3 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MTPCGACKYQ RRRCGADCLM APYFPAESIQ RFAYVHHVFG GGNVSNILKS TKPELRKWTA 60 RALTYQAEAR VRDPVHGCVG VICEQEESLR ILKEKLEKAK REVAKYVGPE VMQKMIEQCS 120 SYPHANMVDL EAPLAITIDD ADLSSWDPFP AWEPAFSRLQ PPQGGDAKGE TIAPPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-28 | 3 | 106 | 11 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-28 | 3 | 106 | 11 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G246800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155958.1 | 1e-130 | hypothetical protein PHAVU_003G246800g | ||||
TrEMBL | V7CCN1 | 1e-129 | V7CCN1_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155958.1 | 1e-130 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19459 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 2e-36 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G246800.1 |
Entrez Gene | 18635953 |