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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.003G246700.1 |
Common Name | PHAVU_003G246700g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
LBD |
Protein Properties |
Length: 274aa MW: 30406.4 Da PI: 6.4116 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.003G246700.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 136.8 | 8e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91
+CaaCk+lrrkC+++Cv+apyfp ++p++f++vh++FGasnv+kll++l+ +r+da++sl+yeAear+rdPvyG+vg+i+ lqq+l+q +
Phvul.003G246700.1 7 PCAACKLLRRKCTQECVFAPYFPPDNPQRFECVHRVFGASNVSKLLNELSVAQRDDAVKSLAYEAEARLRDPVYGCVGLISLLQQRLRQIQ 97
7****************************************************************************************** PP
DUF260 92 aelallkee 100
el+ +k+e
Phvul.003G246700.1 98 MELHIAKKE 106
****99876 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 274 aa
Download sequence Send
to blast |
MSSMNSPCAA CKLLRRKCTQ ECVFAPYFPP DNPQRFECVH RVFGASNVSK LLNELSVAQR 60 DDAVKSLAYE AEARLRDPVY GCVGLISLLQ QRLRQIQMEL HIAKKEFSTY VSPQTMQILL 120 ANPGMVPPAE IVGPPPHQPM FNHGGNNMVP QQILVGHGGG QTVVRDPQQQ DFQEAQQIIL 180 ATREQQQMFR NYEHQVYGGF EPGNGGFGNQ AELLSPSLAH GNFGNVGAYQ MQQQGEQHPI 240 EAQLLLSPQQ GQPHQQQQCE SEDGRNVLDF SIK*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |