PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G244400.1
Common NamePHAVU_003G244400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family B3
Protein Properties Length: 484aa    MW: 54958.6 Da    PI: 7.9484
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G244400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19122212199
                         EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         f+k l++s+v +   + lp +f+++h  +  +++t++lede g++++ k+      +++vl++GW++F  +++L+egD vvF+l++ ++f 
  Phvul.003G244400.1 122 FVKSLIRSHVASCFGMGLPVSFCKRHLPD--KDTTIILEDEYGKEYNTKF--I--ACKMVLSAGWRQFSAEHKLQEGDAVVFQLVEPTKF- 205
                         89************************534..5679***************..4..45589***********************9876666. PP

                         .EEEEE-S CS
                  B3  92 lvvkvfrk 99 
                          ++ ++r+
  Phvul.003G244400.1 206 -KIYIIRA 212
                         .8887775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-22114213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-23117213IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-27120211No hitNo description
PfamPF023624.2E-17122212IPR003340B3 DNA binding domain
PROSITE profilePS5086314.113122213IPR003340B3 DNA binding domain
SMARTSM010197.1E-24122213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MVVIDERNRD RANRRDVVEF PQYDQAVTVA YYGEELHGGV PLPHSSRMSP LNMDKQNKVV  60
ENKYKRLNNN QTKQATPAEA QKFSSSMKAA VEGTSSRGEV MSSAVLQAEE VQSNLRPEFP  120
SFVKSLIRSH VASCFGMGLP VSFCKRHLPD KDTTIILEDE YGKEYNTKFI ACKMVLSAGW  180
RQFSAEHKLQ EGDAVVFQLV EPTKFKIYII RANNTRELDG AFLNLDSCTK QKMGGKDSTD  240
TDVVTCNSSK RKHGKSVPLD IQKKKKANLS RLRPKAGPSV EQSENDSEEA LSEVVEEFKM  300
LEFEDMRGFE NFSIIVEGVS IDVEFPTEVR NKYYRLCCSQ HAFLHENLIK GMNYKLIAGI  360
ISETVNIADA IRVSVICTPR FEFANWDKTL LAFEHLGMNV EFLRIRLRRL VSIAYEKNDV  420
SEAKKYLAYR NEPSRADDEI RIMEVKLEEL KGACNGFGAY LGSLKGKAEN YQMKFRREVD  480
APW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1249265KRKHGKSVPLDIQKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G244400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155931.10.0hypothetical protein PHAVU_003G244400g
TrEMBLV7CF750.0V7CF75_PHAVU; Uncharacterized protein
STRINGXP_007155931.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-32B3 family protein