PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G242900.1 | ||||||||
Common Name | PHAVU_003G242900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 404aa MW: 44967.7 Da PI: 7.0779 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.2 | 4.7e-16 | 170 | 216 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR++iN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Phvul.003G242900.1 170 VHNLSEKRRRSKINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 216 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.5E-20 | 163 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-20 | 163 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.911 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.86E-16 | 169 | 220 | No hit | No description |
Pfam | PF00010 | 1.4E-13 | 170 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-18 | 172 | 221 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 404 aa Download sequence Send to blast |
MSYVISFVSF PSVSQTSHLH FHYITHITLT NTNINTCLCN QLPIPNSQKR KLLTLLSPFS 60 LLSYLQPKQY NLFSSSSSST HHQISLPPSI SMLRFCTSKT AQQNALQDGI SAYNPSSAAN 120 VSSSSVPLNN ETDEYDCESE EGEALVDEVP IPPKCFRSGS SSKRSRAAEV HNLSEKRRRS 180 KINEKLKALQ NLIPNSNKTD KASMLDEAIE YLKQLQLQVQ MLSMRNRLSL HPMFFPEGLQ 240 PPQLPQMRMD PSEENRSIPS NTTATLPIQQ ENPMPYSSTL PNKQIVADQP SMSAASYLFN 300 SETSFRLESH IPENIRSFQL RSFSEMCRED ILQHQLLNAN HSDTNPLGCS QGTLATASIS 360 FDMQKSAVKD NSSLENCIPG SDQSGLVLRN SEPNIILTQR LIG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G242900.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 2e-47 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155915.1 | 0.0 | hypothetical protein PHAVU_003G242900g | ||||
Swissprot | Q9FUA4 | 3e-46 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | V7CCP0 | 0.0 | V7CCP0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155915.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2276 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36930.1 | 3e-47 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G242900.1 |
Entrez Gene | 18635913 |