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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.003G240900.1 |
Common Name | PHAVU_003G240900g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
WRKY |
Protein Properties |
Length: 320aa MW: 34276.9 Da PI: 10.0986 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.003G240900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 99.3 | 2.3e-31 | 248 | 305 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh
Phvul.003G240900.1 248 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPAMLVVTYEGEHNHA 305
99************************988****************************6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 320 aa
Download sequence Send
to blast |
MAVELMTGYR TTTFTTKAEE NAVQEAASGL ESVEKLIRLL SQTPQQYNSS NQIAIDCKAV 60 ADLAVSKFKN VISLLGPGPG PTPTGHARFR RAPLPPPPPP PPPSSTQPSQ PSVFHATPLH 120 QIPKTDNTLN NDPSSKTIYF SYPTPATSFI SSLTADAHTK QPSSSSPPPP APGAFHITSL 180 SHVSSAGKPP LSSSSSFKRK CSSENLPSGK CGSSSSRCHC SKKSRKMRLK RVVRVPAISL 240 KMADIPPDDY SWRKYGQKPI KGSPHPRGYY KCSSVRGCPA RKHVERALDD PAMLVVTYEG 300 EHNHALSAAD ATNLILESS*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1wj2_A | 1e-21 | 243 | 308 | 14 | 78 | Probable WRKY transcription factor 4 |
2ayd_A | 1e-21 | 234 | 306 | 2 | 73 | WRKY transcription factor 1 |
2lex_A | 1e-21 | 243 | 308 | 14 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |