PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G232300.1
Common NamePHAVU_003G232300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 324aa    MW: 36446 Da    PI: 7.1524
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G232300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-161462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        rg+W++eEd +l+ +++ +G+g +W + ++++g++R++k+c++rw++yl
  Phvul.003G232300.1 14 RGPWSPEEDAKLKSYIEDHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                        89*********************************************97 PP
2Myb_DNA-binding37.65.2e-1269111246
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  Phvul.003G232300.1  69 GGFSEEEDNIICSLYVNIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                         569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.876962IPR017930Myb domain
SuperFamilySSF466893.84E-2611109IPR009057Homeodomain-like
SMARTSM007171.4E-121364IPR001005SANT/Myb domain
PfamPF002492.3E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-241569IPR009057Homeodomain-like
CDDcd001671.25E-91662No hitNo description
PROSITE profilePS5129421.08263117IPR017930Myb domain
SMARTSM007171.6E-1067115IPR001005SANT/Myb domain
PfamPF002491.0E-1069111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370117IPR009057Homeodomain-like
CDDcd001671.90E-771111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIE DHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYVNIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKEQHAHAR RVGGLKQEIK RESEDLMLPV GVISRTPCWP HEQNSWPIPV ANACLQYYDL  180
NNKTSSIVHI PDNTVTATMN SQYSSFDISL TQDQLYPSTG NMITTDTCHT SNVFQGFGNF  240
SSDFACVNSQ QMDGSELVFY GMESMEIANG STNTNSTEST SWGDIISSMV YPPLVSHYEA  300
CQQRIMPQDV TFEESSYFAM RTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G232300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155794.10.0hypothetical protein PHAVU_003G232300g
SwissprotQ9M2Y94e-85RAX3_ARATH; Transcription factor RAX3
TrEMBLV7CEJ80.0V7CEJ8_PHAVU; Uncharacterized protein
STRINGXP_007155794.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.11e-79myb domain protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  3. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]