PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G231200.1
Common NamePHAVU_003G231200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 361aa    MW: 40168.3 Da    PI: 7.9627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G231200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.5e-13187234355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++Le A++Y+k+Lq
  Phvul.003G231200.1 187 QDHVIAERKRREKLSQRFIALSALVPGL-----KKMDKATVLEDAIKYVKQLQ 234
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.063184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.0E-11187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-17188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-17188244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.10E-13189238No hitNo description
SMARTSM003537.3E-15190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MTQISSTIYL PEFGMEDPTL FHQYPMDSFP FQLDDFDFES FSASPKGSSS HKRLSSESTQ  60
NSSLTQSAET SVAPPRPTKQ PKTTMSTWSA YGTDMMAPKA ASSSSSKIIS FDKSNASSVS  120
SQQSQQFYKL DAAKLLKKPK IEIGYGESLD FAAVASQSSY DNDCFLGYDK EEKKAAVTMA  180
RNPTQAQDHV IAERKRREKL SQRFIALSAL VPGLKKMDKA TVLEDAIKYV KQLQERVKIL  240
EEQTVDKTVE SAVFVKRSVV FTRDDSSYSD ENSNQSLPEI EARISGKEVL VRLHCDKHSG  300
RAAAILRELE KHNLTVQSSS FLPFGNNTLD ITIVAKMDKD YCLTAKDLIR NLSQCLRQLS  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1192197ERKRRE
2193198RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G231200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155781.10.0hypothetical protein PHAVU_003G231200g
SwissprotQ9T0727e-54BH025_ARATH; Transcription factor bHLH25
TrEMBLV7CES60.0V7CES6_PHAVU; Uncharacterized protein
STRINGXP_007155781.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-56bHLH family protein