PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G212200.1
Common NamePHAVU_003G212200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 648aa    MW: 71898.9 Da    PI: 6.1886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G212200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS413.32.2e-1262626311373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+lL+ c++a+ s++ +++++++a+l +lasp+g+p+ R+ ayfteALa r++r +++++++ + s++   + +e+ +al+l+++v+Pi+
  Phvul.003G212200.1 262 LVSLLTGCVDAIGSRNVAAINQFIAKLGDLASPRGNPISRICAYFTEALAIRVTRLWPHVFHITTNSRDM-VEDDETGTALRLLNQVTPIP 351
                         6899*********************************************************987666665.567888899*********** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf h+t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+ l+etg+rLa fAe+l++pfef++ v
  Phvul.003G212200.1 352 KFIHFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGIGE----SKQDLNETGDRLAGFAEALNLPFEFHP-V 437
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.e 272
                         ++rled++l++L+vk++E++aVn+vlqlh++l +    +   +++L l++s++P vvvv+eqea+hn++++ +r++++l+yysalfd++ e
  Phvul.003G212200.1 438 VDRLEDVRLWMLHVKEQETVAVNCVLQLHKTLYDGSGGA--LRDFLGLIRSTNPSVVVVAEQEAEHNETRLEARVCNSLKYYSALFDCIeE 526
                         *******************************95543333..589*********************************************99 PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrve...eesgslv 359
                         +++++es  r+k+E++  grei+n+vaceg+er erhe ++kWr++l e  G++ + +se++ +q +lll+++  + y+v+   +e +++v
  Phvul.003G212200.1 527 SGVAQESAVRVKIEEM-YGREIRNMVACEGRERLERHEGFGKWRRMLVEeGGLRCLGVSEREISQSQLLLKMYCCENYSVKkveKEGATAV 616
                         99**************.9***************************9865499**********************88899996643344444 PP

                GRAS 360 .lgWkdrpLvsvSaW 373
                          l W d+pL++vSaW
  Phvul.003G212200.1 617 tLSWLDQPLYTVSAW 631
                         5************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.613236608IPR005202Transcription factor GRAS
PfamPF035147.5E-124262631IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MLAGCSSSTL LSPSHRLRSE APAQFQACHF PRPSMSTQRL DLPCSTFTRK DSSSRSQPLL  60
RPVGLSVEKP IEAKTSTCSL KHNIRLPPLA ITAATPLVEE SIKDKSLKRL AEHDESFTNI  120
AKRKKGITEC DNSGDNFWFQ PGLEGNTLGG LNNTSLPFSS EEERVCFVPS EVVSHSAPFP  180
LNPWLESCVT KITNFGEGSH RPRQHHNDHG AEGSVSNASS ESQSLRLNEN ASEHEVGNGS  240
GNPYHHHEVE TGEEDDHHGL ELVSLLTGCV DAIGSRNVAA INQFIAKLGD LASPRGNPIS  300
RICAYFTEAL AIRVTRLWPH VFHITTNSRD MVEDDETGTA LRLLNQVTPI PKFIHFTSNE  360
MLLRAFEGKD RVHIIDFDIK QGLQWPSLFQ SLASRTNPPS HVRITGIGES KQDLNETGDR  420
LAGFAEALNL PFEFHPVVDR LEDVRLWMLH VKEQETVAVN CVLQLHKTLY DGSGGALRDF  480
LGLIRSTNPS VVVVAEQEAE HNETRLEARV CNSLKYYSAL FDCIEESGVA QESAVRVKIE  540
EMYGREIRNM VACEGRERLE RHEGFGKWRR MLVEEGGLRC LGVSEREISQ SQLLLKMYCC  600
ENYSVKKVEK EGATAVTLSW LDQPLYTVSA WVPVDVAGTS SSFSHPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6625363310380Protein SCARECROW
5b3h_A3e-662536339379Protein SCARECROW
5b3h_D3e-662536339379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G212200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155560.10.0hypothetical protein PHAVU_003G212200g
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLV7CBL60.0V7CBL6_PHAVU; Uncharacterized protein
STRINGXP_007155560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein