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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.003G201300.1 |
Common Name | PHAVU_003G201300g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
MYB |
Protein Properties |
Length: 434aa MW: 49519.8 Da PI: 7.4519 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.003G201300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 56.1 | 8.8e-18 | 175 | 221 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g WT +Ed ll+++v q+G + W+ Ia+ ++ gR +kqc++rw+++l
Phvul.003G201300.1 175 KGQWTSDEDRLLIQLVDQYGVRKWSHIAQALP-GRIGKQCRERWHNHL 221
799*****************************.*************97 PP
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2 | Myb_DNA-binding | 53.9 | 4.1e-17 | 229 | 269 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
WT+eEd++l++a+++ G++ W+ Ia+++ gRt++++k++w+
Phvul.003G201300.1 229 IWTEEEDKILIEAHAEIGNK-WAEIAKKLT-GRTENSIKNHWN 269
6*******************.********9.***********8 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 434 aa
Download sequence Send
to blast |
MHVQENCLKP SMGDELPFGA PSSQGFLQDY HHIDQFPVNN GSSSNPIFGV HTPNFDPFDH 60 NVNCESAPPD FEVFECKPIA ESNGSAHAHL MHNFQYVGYS LNLPRTNQMD MVVANQRYLP 120 FNALETKPLN FVVPDEVSCI SPPNYYKRVG LNKNLRESPT TRRTFKARKK SNIVKGQWTS 180 DEDRLLIQLV DQYGVRKWSH IAQALPGRIG KQCRERWHNH LRPDIKKDIW TEEEDKILIE 240 AHAEIGNKWA EIAKKLTGRT ENSIKNHWNA TKRRQYSKRK CRSKYPRGSL LQEYIKSLNL 300 DQNPPMDYRK KSAKNGNAKT NNNGKAAAQL LCVDQFCPNG QLVPKYDFNE VPDFCLDDNL 360 FEEGCSIDSL LDNIQSASTM EGKQSHQGGI MQRVHVDEHH ETEMRAPTMG IEVKKELDLV 420 EMISHHVNES IGI*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |