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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.003G199500.1 | ||||||||
Common Name | PHAVU_003G199500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | bHLH | ||||||||
Protein Properties | Length: 197aa MW: 22510.2 Da PI: 10.0843 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.9 | 2e-09 | 17 | 67 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR +++ ++L +++P+ + k+++ ls + L +A YIk+L+ Phvul.003G199500.1 17 KTIERNRRIHMKGLCFKLVSIIPSkDLKPTKDMLSQQDQLDLAATYIKHLR 67 689*********************987777777****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-9 | 4 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.026 | 11 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.49E-4 | 11 | 71 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-9 | 15 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-6 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MKNTNTTITA SSKLDRKTIE RNRRIHMKGL CFKLVSIIPS KDLKPTKDML SQQDQLDLAA 60 TYIKHLRERL EKLKGEKEKA MNMMRTTQTN NGIFNIESQL PLLEIKELGS GIEVMLISGV 120 NKNFMLYEVI SVLEEEGVEV VTANFTTVAN KIFYTVHAKV KISRVGVEST RIYQRLQELI 180 QPLEAGSTYR DRKQNY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.003G199500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095983 | 1e-177 | BT095983.1 Soybean clone JCVI-FLGm-15G16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007155415.1 | 1e-143 | hypothetical protein PHAVU_003G199500g | ||||
TrEMBL | V7CB84 | 1e-141 | V7CB84_PHAVU; Uncharacterized protein | ||||
STRING | XP_007155415.1 | 1e-142 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6849 | 21 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 3e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.003G199500.1 |
Entrez Gene | 18635474 |