PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.003G195700.1

Common Name

PHAVU_003G195700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB_related

Protein Properties

Length: 300aa MW: 32611.8 Da PI: 9.1405

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G195700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.7e-14	88	132	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I++ k+Rt+ q+ s+ qky Phvul.003G195700.1 88 PWTEEEHKLFLVGLQKVGKGDWRGISKNYVKTRTPTQVASHAQKY 132 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	18.262	81	137	IPR017930	Myb domain
SuperFamily	SSF46689	3.14E-17	83	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.7E-17	84	135	IPR006447	Myb domain, plants
SMART	SM00717	3.9E-10	85	135	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-11	87	132	IPR009057	Homeodomain-like
CDD	cd00167	8.45E-10	88	133	No hit	No description
Pfam	PF00249	6.1E-12	88	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSPSCAATDS VASGEIMLFG VRVVVDSMRK SVSMNNLSQY EHPQDGNNNN NTNNIKKEVL 60 TAGYASADDA VPHNSVRHRE RERKRGVPWT EEEHKLFLVG LQKVGKGDWR GISKNYVKTR 120 TPTQVASHAQ KYFLRRSNLN RRRRRSSLFD ITTDTVSAVL MEDEQVQNQD SLSHPQPVCP 180 AIPETSKSGF PMMPVYQFGV GSGVISVQGG KPLEELTLGQ GNIEHKVPIN LVRAIPVVAD 240 PKAPTVSDII TPSSGSAVDL PTLSLGLSFS SDQRQTSSRH PALHAIPCFS NGDSVISVA*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269\|PubMed:21030505}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00631	PBM	Transfer from PK23829.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G195700.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269\|PubMed:21030505}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	1e-168	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155372.1	0.0	hypothetical protein PHAVU_003G195700g
Swissprot	Q2V9B0	5e-69	MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBL	V7CEN4	0.0	V7CEN4_PHAVU; Uncharacterized protein
STRING	XP_007155372.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4248	31	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19000.2	1e-54	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Phvul.003G195700.1
Entrez Gene	18635435

Publications ? help Back to Top
Shin D, et al. Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance. Plant Physiol., 2011. 155(1): p. 421-32 [PMID:21030505]