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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.003G192900.1 |
Common Name | PHAVU_003G192900g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
HD-ZIP |
Protein Properties |
Length: 329aa MW: 37284.8 Da PI: 4.39 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.003G192900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.2 | 3.2e-19 | 82 | 135 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++++q++ Le+ Fe+++++ e++++LAk lgL+ rqV +WFqNrRa+++
Phvul.003G192900.1 82 KKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWR 135
56689************************************************9 PP
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2 | HD-ZIP_I/II | 127.2 | 7e-41 | 81 | 173 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
ekkrrls++qv++LE+sFeee+kLeperK++la++Lglqprqva+WFqnrRAR++tkqlEkdye L++++++lk++ e+L ke+++L++e+
Phvul.003G192900.1 81 EKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWRTKQLEKDYEILHDSFESLKANYESLLKEKDKLKSEV 171
69**************************************************************************************998 PP
HD-ZIP_I/II 92 ke 93
++
Phvul.003G192900.1 172 AH 173
75 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MAAGRAFSDI TTFLRNQTAP PTSQPLDSLF LSSSTASFLG SRSMMSFEGE GGKGCNGSFF 60 RAFDIDENGD ECMDEYFHQP EKKRRLSANQ VQFLEKSFEE ENKLEPERKT KLAKDLGLQP 120 RQVAIWFQNR RARWRTKQLE KDYEILHDSF ESLKANYESL LKEKDKLKSE VAHLSEKVVA 180 REKEEGQLKQ GERGTKGLQE QEQEQDEEAP QRPILDSVSE GEGSKVSCVV GGCKQEDISS 240 ARSDILDSDS PHYTDGVHSA VLEHGDSSYV FEPDQSDMSQ DEEDNLSKSL YPSYLFPKLE 300 DADYSDPTES SCNFGFSEED HALWNWEY*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |