PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G192900.1
Common NamePHAVU_003G192900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37284.8 Da    PI: 4.39
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G192900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.2e-1982135356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k+++++++q++ Le+ Fe+++++  e++++LAk lgL+ rqV +WFqNrRa+++
  Phvul.003G192900.1  82 KKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWR 135
                         56689************************************************9 PP

2HD-ZIP_I/II127.27e-4181173193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ekkrrls++qv++LE+sFeee+kLeperK++la++Lglqprqva+WFqnrRAR++tkqlEkdye L++++++lk++ e+L ke+++L++e+
  Phvul.003G192900.1  81 EKKRRLSANQVQFLEKSFEEENKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWRTKQLEKDYEILHDSFESLKANYESLLKEKDKLKSEV 171
                         69**************************************************************************************998 PP

         HD-ZIP_I/II  92 ke 93 
                         ++
  Phvul.003G192900.1 172 AH 173
                         75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1969139IPR009057Homeodomain-like
PROSITE profilePS5007117.71877137IPR001356Homeobox domain
SMARTSM003891.3E-1880141IPR001356Homeobox domain
CDDcd000861.36E-1782138No hitNo description
PfamPF000461.7E-1682135IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-2084144IPR009057Homeodomain-like
PRINTSPR000311.3E-5108117IPR000047Helix-turn-helix motif
PROSITE patternPS000270112135IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5117133IPR000047Helix-turn-helix motif
PfamPF021831.5E-15137178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAAGRAFSDI TTFLRNQTAP PTSQPLDSLF LSSSTASFLG SRSMMSFEGE GGKGCNGSFF  60
RAFDIDENGD ECMDEYFHQP EKKRRLSANQ VQFLEKSFEE ENKLEPERKT KLAKDLGLQP  120
RQVAIWFQNR RARWRTKQLE KDYEILHDSF ESLKANYESL LKEKDKLKSE VAHLSEKVVA  180
REKEEGQLKQ GERGTKGLQE QEQEQDEEAP QRPILDSVSE GEGSKVSCVV GGCKQEDISS  240
ARSDILDSDS PHYTDGVHSA VLEHGDSSYV FEPDQSDMSQ DEEDNLSKSL YPSYLFPKLE  300
DADYSDPTES SCNFGFSEED HALWNWEY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G192900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155341.10.0hypothetical protein PHAVU_003G192900g
TrEMBLV7CDH20.0V7CDH2_PHAVU; Uncharacterized protein
STRINGXP_007155341.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-37homeobox 1