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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.003G192000.1 |
Common Name | PHAVU_003G192000g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
WRKY |
Protein Properties |
Length: 645aa MW: 69891.4 Da PI: 7.1363 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.003G192000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 94.4 | 7.9e-30 | 282 | 341 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+ +d +++++tYeg+Hnh+
Phvul.003G192000.1 282 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIApSCPVRKQVQRCVDDMSILITTYEGTHNHT 341
58***************************99****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 645 aa
Download sequence Send
to blast |
MQALFSPVFM LIYKEGLCSR TQKKKPDQEG TRAYEERKFP HMELASERSG DGGSGLKEEN 60 RSDEYTVGDA EDSPHKQEII VQEAPAANTE RSKQEAGPST SADKKEEVDD QLESTKAEMG 120 VVREENQRLK RSLNKIMSEY RTLEMQFQDV LKQGTKRNKG NDNQEDTLEE SDLVSLSLGR 180 VPNNQRNDEK IKVCKKLKDD EGFNEDLTLG LCKSKSGSTT EALPNPIPEN SSEVPKEEAG 240 ETWPPSKETQ KTIRDTEDEV AQQNPMKKPR VCVRARCDTP TMNDGCQWRK YGQKIAKGNP 300 CPRAYYRCTI APSCPVRKQV QRCVDDMSIL ITTYEGTHNH TLPPSATAMA STTSAAASML 360 LSGSSTSHSA STPSTTAATS ATNLHGLNFY LSDGSKPRQL YLSNPALSSS PSHPTITLDL 420 TSHPASSSSS PFVRFSSNYN QPRYPSSSSL SFSSSSEINA LSWSNGFLNN NNTIQPPYNT 480 RNILGNVNFG RQQVENIYQS YMQKNNSNIP NVPQGGVPAD TISAATKVIT ADPTFQSALA 540 AALTSFIGGG VRGNQGGNSV GESPSLGQKM KWGEVFPASN NSSSTLPCST SKVNGCASSF 600 LNKTPANNTQ TKSLMFLPPS SLPFSTPKSA SASASPADNS DTTN*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1wj2_A | 8e-21 | 282 | 343 | 17 | 77 | Probable WRKY transcription factor 4 |
2ayd_A | 6e-21 | 270 | 344 | 2 | 75 | WRKY transcription factor 1 |
2lex_A | 8e-21 | 282 | 343 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |