PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

MYB

Protein Properties

Length: 311aa MW: 34674.4 Da PI: 6.3435

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.003G190400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv +++++G+g+W++++ g+ R+ k+c++rw +yl Phvul.003G190400.1 17 KGPWTPEEDIMLVSYIQEHGPGNWRSVPTNSGLIRCSKSCRLRWTNYL 64 79********************************************97 PP
2	Myb_DNA-binding	51.2	2.8e-16	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++++v++ ++lG++ W++Ia++++ Rt++++k++w+++l Phvul.003G190400.1 70 RGNFTEHEEKIIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 115 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-23	8	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.835	12	68	IPR017930	Myb domain
SuperFamily	SSF46689	3.04E-30	14	111	IPR009057	Homeodomain-like
SMART	SM00717	4.5E-13	16	66	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-15	17	64	IPR001005	SANT/Myb domain
CDD	cd00167	3.34E-11	19	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-24	68	120	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.849	69	119	IPR017930	Myb domain
SMART	SM00717	5.4E-16	69	117	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-14	70	115	IPR001005	SANT/Myb domain
CDD	cd00167	1.68E-11	72	115	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MCEMGRSSCC DKIEIKKGPW TPEEDIMLVS YIQEHGPGNW RSVPTNSGLI RCSKSCRLRW 60 TNYLRPGIKR GNFTEHEEKI IVHLQALLGN RWAAIASYLP ERTDNDIKNY WNTHLKKKLK 120 LSDQSGNEEG VEQERHSSSS HPKGQWERRL QTDIQTAKQA LCDALSLHTT PATHAVPETI 180 PSSTSHPPYS QASSSYASSY ENISRLMENW MKTPSSNETN SLGGFSFSNT VNNTPRCSSS 240 EGAHSTTNTT CAQDNVFDLF TFSSSTNYGS PSQTQVPLTM IENWLFEDGS SQSQGDLMSM 300 SLEESTLGLF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-27	14	119	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.003G190400.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015034	0.0	AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007155313.1	0.0	hypothetical protein PHAVU_003G190400g
Swissprot	P81392	1e-107	MYB06_ANTMA; Myb-related protein 306
TrEMBL	V7CAU5	0.0	V7CAU5_PHAVU; Uncharacterized protein
STRING	XP_007155313.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1016	34	115

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47600.1	3e-97	myb domain protein 94

Link Out ? help Back to Top
Phytozome	Phvul.003G190400.1
Entrez Gene	18635382

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]