PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G186100.1
Common NamePHAVU_003G186100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 564aa    MW: 62224.8 Da    PI: 7.7514
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G186100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.00087476498123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k+F++   L  H r+H
  Phvul.003G186100.1 476 HECPICLKVFPSGQALGGHKRSH 498
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.381133IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7851133IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-51133No hitNo description
PfamPF139120.00591133IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
SuperFamilySSF576671.06E-592119No hitNo description
SMARTSM003550.08497119IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.55497124IPR007087Zinc finger, C2H2
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
PfamPF139121.8E-699121IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.284387414IPR007087Zinc finger, C2H2
SMARTSM003550.056387409IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.83E-7387409No hitNo description
PfamPF139123.4E-12387411IPR007087Zinc finger, C2H2
PROSITE patternPS000280389409IPR007087Zinc finger, C2H2
SuperFamilySSF576673.83E-7471498No hitNo description
SMARTSM003550.071476498IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995476498IPR007087Zinc finger, C2H2
PfamPF139122.3E-13476499IPR007087Zinc finger, C2H2
PROSITE patternPS000280478498IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MEGDRIQELK HACKFCGKCF PCGRSLGGHM RSHITNLSSE EKEKLPSRKL FSSSLNNDGD  60
KDSEAAATNA AYGLRENPKK TWRISDHSSE DALVFDKFCK ECGKAFHSWK ALFGHMKCHS  120
EKERLSNSLE DQDSWTNAKV VMDSQSDNEA TAPNKRRRSK RRTRYTVASA AATSSVVSFA  180
NPSSSLSEVE QEQEEVAMSL MMLSRDVSPW SGPHSVAESS DNNSAYFEAR SSVRTNLVAK  240
FDGNSNFTPN TARMIKQSDN KWEVGNSENP NSIRGKSSQR LTTTAATVEI AENGFRVNKS  300
GVSSIGYEKV NKSELQYVSA LGDSEGEHGR SRVNGPESIL SKSTTTGNKY YSIKTKFLGS  360
ELKSNKNWVD KASEAESSKN SNKRGKFECT TCNKTFHSYQ ALGGHRASHK KIKGCFASRN  420
ESSENSIETD LPPDPITTEN KLMSNTDREY LGESQHGAGF HDEVETVTES KKSKGHECPI  480
CLKVFPSGQA LGGHKRSHMT GGSESRNFQT VVLQEPVAEI RDFLDLNLPA ATEEESNSHA  540
DSNRPWWVVE GNHKQEALVG LIL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153160NKRRRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G186100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155253.10.0hypothetical protein PHAVU_003G186100g
TrEMBLV7CAP00.0V7CAP0_PHAVU; Uncharacterized protein
STRINGXP_007155253.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.14e-31C2H2-like zinc finger protein