PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G174900.1
Common NamePHAVU_003G174900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 348aa    MW: 39724.2 Da    PI: 5.6109
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G174900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-072863182254
                         SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          +yp++e++++L +++gL+ +q+ +WF N+R +
  Phvul.003G174900.1 286 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 318
                         69*****************************87 PP
2ELK29.12.2e-10239260122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELKh+L+++Y+++++++++E++
  Phvul.003G174900.1 239 ELKHELKQGYKEKIVDIREEIL 260
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1874118IPR005540KNOX1
PfamPF037902.2E-1776117IPR005540KNOX1
SMARTSM012561.1E-25127182IPR005541KNOX2
PfamPF037918.7E-19132181IPR005541KNOX2
PfamPF037897.7E-7239260IPR005539ELK domain
SMARTSM011886.1E-4239260IPR005539ELK domain
PROSITE profilePS512139.969239259IPR005539ELK domain
PROSITE profilePS5007111.564259322IPR001356Homeobox domain
SuperFamilySSF466898.55E-16261326IPR009057Homeodomain-like
SMARTSM003891.6E-10261326IPR001356Homeobox domain
CDDcd000861.82E-10262323No hitNo description
Gene3DG3DSA:1.10.10.601.1E-24266323IPR009057Homeodomain-like
PfamPF059203.9E-18279318IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MAFHDHLQHE IAFQRFTEEQ ELSEGRDMQQ RLPATWLNNV NAAQQRQQNF LDSAAEKSAD  60
RNRGESNCES EDLREYKADI LGHPLYDQLL SAHVSCLRIA TPVDQLPRID AQLQQSQRVV  120
EKYSALANNG VVDEKELDQF MTHYVLLLCA FKEQLQQHVR VHAMEAVMAC WDLEQSLQSL  180
TGVSPGEGTG ATMSDDEDDQ AESNGNLYEG TFDGGETLGF GPLVPTETER SLMERVRHEL  240
KHELKQGYKE KIVDIREEIL RKRRAGKLPG DTTSLLKAWW QAHSKWPYPT EEDKARLVQE  300
TGLQLKQINN WFINQRKRNW HTNNPSSSSN TKSKRKSAGE SSNQSFM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.003G174900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155117.10.0hypothetical protein PHAVU_003G174900g
SwissprotP480001e-161KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLV7CDZ80.0V7CDZ8_PHAVU; Uncharacterized protein
STRINGXP_007155117.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-157KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]